Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_J10
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0812 + 23383704-23384143,23384902-23385247 252 2e-67
06_01_0811 - 6113491-6113925,6114079-6114185,6114569-6114788,611... 33 0.20
07_01_1201 - 11419851-11419913,11420090-11420311 32 0.35
03_03_0091 - 14371528-14372661 30 1.9
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26... 29 2.4
02_05_0812 + 31942591-31942758,31943415-31943491,31944169-319443... 29 4.3
01_07_0112 - 41149461-41151674,41151688-41153265,41154344-411555... 29 4.3
04_01_0618 - 8094991-8097288 28 7.5
03_03_0268 + 16047211-16047213,16047349-16047547,16047681-16047922 28 7.5
02_03_0180 - 16031366-16031445,16031950-16032022,16032148-160321... 28 7.5
11_06_0377 - 22900042-22900452,22900527-22902236 27 9.9
02_03_0110 - 15350939-15352162,15352591-15353310,15353776-15353949 27 9.9
>12_02_0812 + 23383704-23384143,23384902-23385247
Length = 261
Score = 252 bits (617), Expect = 2e-67
Identities = 109/159 (68%), Positives = 135/159 (84%)
Frame = +2
Query: 176 VVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMP 355
VV DIIHDPGRGAPLA V FR P+++K +KELF+A EG+YTGQFVYCG++ATL +GNV+P
Sbjct: 44 VVTDIIHDPGRGAPLAKVTFRHPFRYKHQKELFVAAEGMYTGQFVYCGRRATLSIGNVLP 103
Query: 356 VGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNR 535
+ ++PEG +VCN+E +GDRG ARASG++A VI HNPD +R+KLPSGAKK++PSS R
Sbjct: 104 IRSVPEGAVVCNVEHHVGDRGVFARASGDYAIVISHNPDNGTSRIKLPSGAKKIVPSSCR 163
Query: 536 GMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGV 652
M+G VAGGGR +KP+LKAG AYHKY+VKRNCWP VRGV
Sbjct: 164 AMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGV 202
Score = 65.7 bits (153), Expect = 3e-11
Identities = 30/42 (71%), Positives = 34/42 (80%)
Frame = +1
Query: 46 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLHYAERHGYIK 171
MGRVIRAQRKGAGSVF SHT RKG + RSL + ER+GY+K
Sbjct: 1 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLK 42
>06_01_0811 -
6113491-6113925,6114079-6114185,6114569-6114788,
6115112-6115199,6115301-6115431,6115924-6116099,
6116465-6116529,6117014-6117094,6117219-6117358,
6117446-6117532,6117614-6117827,6118102-6118260,
6118860-6118936,6119629-6119796
Length = 715
Score = 33.1 bits (72), Expect = 0.20
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 556 WRWTY*QTYFESWKGIPQVQG 618
W WTY T+F SW +P +QG
Sbjct: 70 WSWTYWSTFFLSWSIVPTLQG 90
>07_01_1201 - 11419851-11419913,11420090-11420311
Length = 94
Score = 32.3 bits (70), Expect = 0.35
Identities = 17/62 (27%), Positives = 27/62 (43%)
Frame = -3
Query: 573 SIRPPPATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPIFSS 394
++ PPP +P +P R+ P G +G P A R+P +P+F S
Sbjct: 12 ALLPPPPPLPALPQGQQWRS-TGPTGKLCFCSFPAGALPPAAGAGQPAPDRQPATPLFPS 70
Query: 393 RL 388
R+
Sbjct: 71 RV 72
>03_03_0091 - 14371528-14372661
Length = 377
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Frame = -3
Query: 561 PPATIPTMPLLLDGRTFLAPDGS-FTLVRLASGLCPITVAKFPEARARRP-LSPIFSSRL 388
PPA P D P G+ T G+ P + A A A L+P+F +
Sbjct: 254 PPAPAPAPVKAEDALPHFFPQGAAVTATAHVHGVDPASAAASAAANAEGGILAPLFKEMV 313
Query: 387 HTMVPSGIAPTGITFP 340
M+ +G+AP + P
Sbjct: 314 RAMLTAGMAPPSLEPP 329
>06_01_0026 +
265755-265968,267319-267468,267694-267738,267786-268460,
268779-268843,268854-269073,269163-269438,269547-269663,
269776-269853,269930-270184,270235-270323,270403-270816
Length = 865
Score = 29.5 bits (63), Expect = 2.4
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +1
Query: 433 LWKLRHCDWT 462
LWK RHCDWT
Sbjct: 73 LWKCRHCDWT 82
>02_05_0812 +
31942591-31942758,31943415-31943491,31944169-31944327,
31944559-31944772,31944849-31944935,31945022-31945161,
31945380-31945460,31945948-31946012,31946219-31946394,
31947212-31947342,31947438-31947525,31947671-31947884,
31948206-31948312,31948456-31948953
Length = 734
Score = 28.7 bits (61), Expect = 4.3
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +1
Query: 556 WRWTY*QTYFESWKGIPQVQG 618
W W+Y T+ +W +P +QG
Sbjct: 70 WSWSYWSTFILTWAVVPTIQG 90
>01_07_0112 -
41149461-41151674,41151688-41153265,41154344-41155507,
41155807-41156293,41156603-41156759,41157303-41157378
Length = 1891
Score = 28.7 bits (61), Expect = 4.3
Identities = 9/30 (30%), Positives = 14/30 (46%)
Frame = -1
Query: 464 CVQSQWRSFQRHVPDDLYHPFSLQDCTQWY 375
C W++ H+P L H + +C WY
Sbjct: 73 CSCGLWKATTHHLPSALCHGLNYVNCAMWY 102
>04_01_0618 - 8094991-8097288
Length = 765
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 238 RSIQVQDKEGALHCSRRALHRPICLLW 318
R Q+ D++ + C+ R +P CLLW
Sbjct: 434 RRNQMVDQQSVIWCAARMTKKPNCLLW 460
>03_03_0268 + 16047211-16047213,16047349-16047547,16047681-16047922
Length = 147
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +2
Query: 464 NPDAKRTRVKLPS--GAKKVLPSSNRGMVGIVAGGGRIDKPI 583
+P + RTR PS GA K ++ +G+ GG R+ PI
Sbjct: 45 SPTSTRTRTSTPSAPGAAKAASPNHVRAIGVREGGARLVGPI 86
>02_03_0180 - 16031366-16031445,16031950-16032022,16032148-16032186,
16032434-16032715,16032790-16032948,16033034-16033390,
16033482-16033622,16033919-16034045,16034121-16034263,
16034740-16034917,16035019-16035552,16035628-16035812,
16036551-16036637,16036710-16036850,16036896-16037175,
16037944-16038020,16038326-16039138,16039292-16039801,
16039926-16040056,16040192-16040246,16040364-16040564,
16040640-16040909,16041103-16041184,16041271-16041434,
16041532-16041690,16041762-16042083,16042158-16042544,
16042811-16042999,16043233-16043317,16043458-16043753,
16043862-16043965,16044484-16044513,16044602-16044817,
16044923-16045540,16045718-16045993,16046619-16046762,
16046854-16046962,16047291-16047475,16047557-16047670,
16048348-16048479,16048929-16049249,16049424-16049891,
16054482-16054547,16054691-16054828,16054917-16055015,
16057098-16057194,16057661-16057761,16057858-16058085,
16059175-16059381,16059451-16059571,16059921-16059988,
16060148-16060213,16060396-16060509,16060949-16061300,
16063571-16063663,16063764-16063922,16064224-16064287,
16064385-16064577,16064673-16064710,16065510-16065645,
16065726-16065914,16065994-16066095,16067660-16067777,
16067861-16067964,16070338-16070346,16071428-16071475,
16071581-16071676,16072430-16072533,16073964-16074045,
16076573-16076601,16076708-16076963
Length = 4246
Score = 27.9 bits (59), Expect = 7.5
Identities = 23/60 (38%), Positives = 32/60 (53%)
Frame = -2
Query: 262 PCLELVWIAEVYNSQRCTSTRVMDYILNNSP*CIHDVQRNVKSEV*ERLSSSSCEKRKLN 83
P ELV + ++ S R TS MD L+ IHD++ + KSE+ L S S E KL+
Sbjct: 1737 PLAELV-LEGLWVSYRTTSLFEMDLYLSILKFLIHDIRPDTKSEMRLMLGSYS-ETSKLS 1794
>11_06_0377 - 22900042-22900452,22900527-22902236
Length = 706
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +2
Query: 326 ATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRL-ARASGNFATVIGHNPDAKRTRVK 493
A L+ G P+G + E VC L + D R+ A +G + G PD + RV+
Sbjct: 373 AALDDGEERPLGGLVEELFVCRLGD--DDEVRVGANHNGEGRRLRGPRPDGEEARVR 427
>02_03_0110 - 15350939-15352162,15352591-15353310,15353776-15353949
Length = 705
Score = 27.5 bits (58), Expect = 9.9
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Frame = +2
Query: 347 VMPVGAMPEG---TIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 517
V+PV +G + E RGR ARAS G N +KR R+ +P+ + +
Sbjct: 469 VVPVTHFQQGWNAPVAIGGEHLYNQRGREARASDAIVINGGDNNLSKRKRLTVPARSNSL 528
Query: 518 LPSSNRGMVGIVAGGGRIDKPI 583
+N I +G R+ PI
Sbjct: 529 --KNNMASNSIKSGSQRMWVPI 548
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,536,380
Number of Sequences: 37544
Number of extensions: 439982
Number of successful extensions: 1199
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1199
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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