Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_J09
(568 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein S14|Sc... 165 5e-42
SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein S14|Schizosa... 165 5e-42
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 28 1.1
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha... 26 3.4
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 26 3.4
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 25 5.9
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 25 7.7
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 25 7.7
>SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein
S14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 139
Score = 165 bits (400), Expect = 5e-42
Identities = 81/124 (65%), Positives = 90/124 (72%)
Frame = +2
Query: 107 LGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAML 286
+GPQ GE VFGVAHIFASFNDTFVH+TDL+G+ETI RVTGGMKVK DRDE+SPYAAML
Sbjct: 5 VGPQIRSGELVFGVAHIFASFNDTFVHITDLTGKETIVRVTGGMKVKTDRDESSPYAAML 64
Query: 287 AAQDVXEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMXIGRIEXVTPVP 466
AAQD KCK +GITALHIK+RA AQ M IGRIE VTP+P
Sbjct: 65 AAQDAAAKCKEVGITALHIKIRATGGTATKTPGPGAQAALRALARAGMRIGRIEDVTPIP 124
Query: 467 SDST 478
+DST
Sbjct: 125 TDST 128
>SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein
S14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 139
Score = 165 bits (400), Expect = 5e-42
Identities = 81/124 (65%), Positives = 90/124 (72%)
Frame = +2
Query: 107 LGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAML 286
+GPQ GE VFGVAHIFASFNDTFVH+TDL+G+ETI RVTGGMKVK DRDE+SPYAAML
Sbjct: 5 VGPQIRSGELVFGVAHIFASFNDTFVHITDLTGKETIVRVTGGMKVKTDRDESSPYAAML 64
Query: 287 AAQDVXEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMXIGRIEXVTPVP 466
AAQD KCK +GITALHIK+RA AQ M IGRIE VTP+P
Sbjct: 65 AAQDAAAKCKEVGITALHIKIRATGGTATKTPGPGAQAALRALARAGMRIGRIEDVTPIP 124
Query: 467 SDST 478
+DST
Sbjct: 125 TDST 128
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 27.9 bits (59), Expect = 1.1
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 209 ETIARVTGGMKVKADRDEASPYAAMLAAQDVXEK 310
ET+ V G +KV + + + Y A +AAQ V EK
Sbjct: 347 ETLKAVLGEIKVPTNEEVIAKYVANIAAQLVEEK 380
>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 26.2 bits (55), Expect = 3.4
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -2
Query: 117 WGPRVTWTSSLATLFFL 67
+GPR+ WTSS ++L F+
Sbjct: 304 FGPRIFWTSSQSSLMFV 320
>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 674
Score = 26.2 bits (55), Expect = 3.4
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +3
Query: 138 CLV*HTFSLHSMTHSFMLLIYPAGKLSPVSLVA*R*RLTVMKRHPTLLCWR 290
CLV T S++ + + ++ VSLV +L ++KR P LL W+
Sbjct: 317 CLVYSTCSINPIENEAVVTAALKATGGAVSLVDVSKKLPLLKRDPGLLSWK 367
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 25.4 bits (53), Expect = 5.9
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Frame = +1
Query: 181 RSCY*FIRP--GNYRPCHWWHEGE 246
RSC+ +R N++ C WW EG+
Sbjct: 347 RSCHSALRSIFTNFKGCTWWIEGD 370
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.0 bits (52), Expect = 7.7
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = -1
Query: 421 TSKSPKCRLSTRTRGLCFVSTSSTE----LYVQGRYAKSFAFLXYILCR 287
+SK L++R + S+SSTE L+ GR++ + + L Y LC+
Sbjct: 23 SSKDAATSLASRVLTIAKGSSSSTEFSNALHTFGRFSDNDSVLIYDLCK 71
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 25.0 bits (52), Expect = 7.7
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Frame = -1
Query: 517 RLQPASXSATLXTGRV*WYGGDXFNAANXHT*TSK-SPKC----RLSTRTRGLCFVSTSS 353
RL P + A + G+V +Y G+ A K P C L + R L
Sbjct: 171 RLNPKNVEALVLRGKVMYYSGENAKAITHFQEALKLDPDCTTAKTLFKQVRKLENTKNQG 230
Query: 352 TELYVQGRYAKSF 314
+L+ QG Y ++
Sbjct: 231 NDLFRQGNYQDAY 243
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,117,938
Number of Sequences: 5004
Number of extensions: 39843
Number of successful extensions: 94
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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