Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_J08
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   2.8  
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    25   6.4  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    25   6.4  
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ...    25   8.4  

>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 21/64 (32%), Positives = 29/64 (45%)
 Frame = +3

Query: 18   LHVTAGASESNSCS*RGDAALTSYRLLVSTTFGLLVLTIPN*YQLYLSSNMDLYFIWLVT 197
            LHV A  S   S   + D+ L  Y L VSTT    +L I       L++ M + + WL  
Sbjct: 1238 LHVAAEISVMRSLRDKLDSFLLRYPLKVSTTLKQKLLII------LLNNEMYMLYTWLTP 1291

Query: 198  FVAG 209
             + G
Sbjct: 1292 VLHG 1295


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 146 STVSIK*YGPLFYLAGNVRGWVL 214
           S + +K +GP +YL+  + GW L
Sbjct: 99  SVLLVKKFGPHYYLSAMIIGWSL 121


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +3

Query: 180 FIWLVTFVAGFWIFKKIKEWQNLPPGPWGLPIVGYLPFIDRYHPHITLTNL 332
           F+WL     GFW+ + I   + LP   +  P++G LPF   Y   + LT L
Sbjct: 105 FVWLEVAWGGFWVSRVIA--RLLPYILY--PLMGILPF-TMYKYTVILTAL 150


>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 655

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -1

Query: 233 LYFFENPKPSHERYQPNKIKVHIT**IQLILVGYR 129
           +Y +   +P       +K+ VH+   I L+L GYR
Sbjct: 192 MYMYNEIRPEVSMLMSHKLAVHVLGKIFLLLDGYR 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,186,833
Number of Sequences: 5004
Number of extensions: 47572
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)