Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_J07
(553 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228; Eukary... 277 9e-74
UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;... 255 4e-67
UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44; Bi... 250 2e-65
UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6; Tr... 196 2e-49
UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n... 191 1e-47
UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 ... 133 3e-30
UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured m... 90 3e-17
UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured m... 89 5e-17
UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6; Thermop... 89 6e-17
UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 86 6e-16
UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13; Euryar... 80 4e-14
UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1; ... 75 1e-12
UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofi... 74 2e-12
UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6; Euryarc... 74 2e-12
UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4; Thermoc... 73 3e-12
UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 71 2e-11
UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus N... 66 4e-10
UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5; Thermop... 65 9e-10
UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1; Nanoarc... 65 1e-09
UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1; Staphylo... 63 4e-09
UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4; Thermop... 63 5e-09
UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella... 60 3e-08
UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarcha... 59 8e-08
UniRef50_Q78TB4 Cluster: 16 days embryo head cDNA, RIKEN full-le... 40 0.038
UniRef50_Q69NC6 Cluster: Putative uncharacterized protein OJ1742... 36 0.83
UniRef50_Q54JS8 Cluster: Putative uncharacterized protein; n=1; ... 34 1.9
UniRef50_UPI00015B6051 Cluster: PREDICTED: similar to ENSANGP000... 33 3.3
UniRef50_A2YFM3 Cluster: Putative uncharacterized protein; n=3; ... 33 3.3
UniRef50_Q5Y974 Cluster: Structural polyprotein; n=13; Solenopsi... 33 4.4
>UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228;
Eukaryota|Rep: 60S ribosomal protein L3 - Homo sapiens
(Human)
Length = 403
Score = 277 bits (680), Expect = 9e-74
Identities = 121/167 (72%), Positives = 145/167 (86%)
Frame = +3
Query: 48 FQHPAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 227
F P HGS+GF P+KRS RHRGKVK+FPKDDPSKPVHLTAF+GYKAGMTH+VRE DRPGS
Sbjct: 6 FSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGS 65
Query: 228 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYKC 407
K+NKKE+VEAVTI+ETPPMV VG+VGY+ETP GLR TV+AEH+S++C+RRFYKNW+K
Sbjct: 66 KVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKS 125
Query: 408 XKKAXFTKAXNKWQDELGRQSIQKDFXNMIRYCXVVRVIAHTQMKLL 548
KKA FTK KWQDE G++ ++KDF +M +YC V+RVIAHTQM+LL
Sbjct: 126 KKKA-FTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLL 171
>UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;
n=1; Caenorhabditis elegans|Rep: Putative
uncharacterized protein rpl-3 - Caenorhabditis elegans
Length = 353
Score = 255 bits (625), Expect = 4e-67
Identities = 111/164 (67%), Positives = 133/164 (81%)
Frame = +3
Query: 48 FQHPAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 227
F P HG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D+PGS
Sbjct: 6 FSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGS 65
Query: 228 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYKC 407
K+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY NW K
Sbjct: 66 KVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKS 125
Query: 408 XKKAXFTKAXNKWQDELGRQSIQKDFXNMIRYCXVVRVIAHTQM 539
KKA FTK KWQDE G++ I+ DF + +YC +RVIAHTQM
Sbjct: 126 KKKA-FTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQM 168
>UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44;
Bilateria|Rep: 60S ribosomal protein L3-like - Homo
sapiens (Human)
Length = 407
Score = 250 bits (611), Expect = 2e-65
Identities = 110/167 (65%), Positives = 136/167 (81%)
Frame = +3
Query: 48 FQHPAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 227
F P HG +GF P KRS RHRGKVK +P+DDPS+PVHLTAF+GYKAGMTH +RE RPG
Sbjct: 6 FSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVHRPGL 65
Query: 228 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYKC 407
KI+K+E VEAVTI+ETPP+V VGVVGY+ TP GLR+ T++AEH+S++CRRRFYK+W+K
Sbjct: 66 KISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKDWHKS 125
Query: 408 XKKAXFTKAXNKWQDELGRQSIQKDFXNMIRYCXVVRVIAHTQMKLL 548
KKA FTKA +W+D G++ +QKDF M +YC V+RVI HTQMKLL
Sbjct: 126 KKKA-FTKACKRWRDTDGKKQLQKDFAAMKKYCKVIRVIVHTQMKLL 171
>UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6;
Trypanosomatidae|Rep: Ribosomal protein L3, putative -
Trypanosoma brucei
Length = 480
Score = 196 bits (479), Expect = 2e-49
Identities = 89/168 (52%), Positives = 120/168 (71%)
Frame = +3
Query: 48 FQHPAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 227
F+HP HG +GF P+KRSR+ RG+ ++FPKDDPS+ HLT+F+ YKAGMTH+VR+ DRPGS
Sbjct: 57 FEHPRHGHLGFLPRKRSRQIRGRARSFPKDDPSQKPHLTSFMVYKAGMTHIVRDVDRPGS 116
Query: 228 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYKC 407
K+NKKE+VE VTI+E PPMV VG+VGY +TP G + + TVWA H S + RRRFYKNW K
Sbjct: 117 KVNKKEVVEPVTILEAPPMVVVGIVGYRQTPVGHKTIGTVWAHHTSVEFRRRFYKNW-KQ 175
Query: 408 XKKAXFTKAXNKWQDELGRQSIQKDFXNMIRYCXVVRVIAHTQMKLLK 551
+ FTK + GR + + + ++RV+AHTQ++ L+
Sbjct: 176 SAQLAFTKRKQFARTTEGRLAEARTLKAFEKKADIIRVVAHTQLRKLR 223
>UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n=2;
Rattus norvegicus|Rep: UPI0000503B42 UniRef100 entry -
Rattus norvegicus
Length = 380
Score = 191 bits (465), Expect = 1e-47
Identities = 90/168 (53%), Positives = 121/168 (72%)
Frame = +3
Query: 45 NFQHPAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPG 224
NF P HGS+GF P+K S H GKVK FPKDD SKPVHLT F+ +KA MTH++++ DRP
Sbjct: 5 NFSAPRHGSLGFSPQKHSCWHHGKVKLFPKDDSSKPVHLTDFLVHKANMTHIIQKVDRPE 64
Query: 225 SKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYK 404
SK+NKKE+VE V I+ETPPMV +G+VGYIE P GL V+AEH+S ++ FYKNW+
Sbjct: 65 SKMNKKEVVEGVAIVETPPMVVMGIVGYIEIPRGLWTFKAVFAEHISGKSKKCFYKNWH- 123
Query: 405 CXKKAXFTKAXNKWQDELGRQSIQKDFXNMIRYCXVVRVIAHTQMKLL 548
+K KA K+ D +G++ ++ +F +M +YC V+ ++AHTQM LL
Sbjct: 124 -SEK----KASTKYFD-MGKRQLEMEFKSMKKYCQVICIVAHTQMCLL 165
>UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 TAR
RNA-binding protein B) (TARBP-B).; n=1; Bos taurus|Rep:
60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein
B) (TARBP-B). - Bos Taurus
Length = 340
Score = 133 bits (321), Expect = 3e-30
Identities = 65/120 (54%), Positives = 87/120 (72%)
Frame = +3
Query: 90 KRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTII 269
K S +H+GKV FPKD SKPV+L+AF+GY+AGMTHVVR+ DRPGSK++KKE+VE VTI+
Sbjct: 1 KCSSQHQGKVTGFPKDGSSKPVYLSAFLGYQAGMTHVVRKVDRPGSKVHKKEVVEVVTIV 60
Query: 270 ETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYKCXKKAXFTKAXNKWQ 449
ET P + VG VG ET GL+ +V+A+H+S +C+R K YK + TKA + W+
Sbjct: 61 ETMPFMTVGTVGCTETIWGLQTFKSVFAKHISNECKRTGIK--YK-TNTSPNTKARSSWR 117
>UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote HF70_59C08|Rep: Ribosomal
protein L3 - uncultured marine group II euryarchaeote
HF70_59C08
Length = 338
Score = 90.2 bits (214), Expect = 3e-17
Identities = 45/99 (45%), Positives = 61/99 (61%)
Frame = +3
Query: 57 PAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 236
P GSMGF P+KR+ R G+VK++P+ D S V + F G+KAGMTHV+ PGS
Sbjct: 7 PKKGSMGFGPRKRANRPYGRVKSWPETD-SDEVRVQGFAGWKAGMTHVMMRDLNPGSPSA 65
Query: 237 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWA 353
E+ +AVT++E PPM + V GY TP+G + WA
Sbjct: 66 GAEVRKAVTVVEVPPMRVLAVRGYKMTPYGKQTAGEAWA 104
>UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote DeepAnt-JyKC7|Rep:
Ribosomal protein L3 - uncultured marine group II
euryarchaeote DeepAnt-JyKC7
Length = 358
Score = 89.4 bits (212), Expect = 5e-17
Identities = 42/103 (40%), Positives = 65/103 (63%)
Frame = +3
Query: 57 PAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 236
P GSMGF P+KR+ R G++ ++P+ + S+ + + F G+KAGMTHV+ P S
Sbjct: 7 PKRGSMGFSPRKRAIRPFGRITSWPETESSE-IRVQGFAGWKAGMTHVLMRDTNPHSTSA 65
Query: 237 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMS 365
+EI +AVT++E PPM + V GY TP+G++ +WA+ S
Sbjct: 66 GQEIRKAVTVVEVPPMKVLAVRGYHMTPYGMQTAGEIWADSSS 108
>UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6;
Thermoprotei|Rep: 50S ribosomal protein L3P - Aeropyrum
pernix
Length = 344
Score = 89.0 bits (211), Expect = 6e-17
Identities = 52/111 (46%), Positives = 67/111 (60%), Gaps = 2/111 (1%)
Frame = +3
Query: 57 PAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 236
P GS+GF P+KR+ R +VK +P+ D KPV L AF+GY+AGMTHV DRPG +
Sbjct: 9 PRRGSLGFSPRKRASRLVPRVKRWPEVDIGKPVPL-AFLGYRAGMTHVFMVDDRPGRPTS 67
Query: 237 KKEIVEAVTIIETPPMVCVGVVGYIETPH-GLRALLTVWAEHMSE-DCRRR 383
KEI VTI+ETPPM V Y P+ G +L WA+ E + +RR
Sbjct: 68 GKEIFVPVTIVETPPMFVAAVRLYGYDPNRGRYSLGEAWAQPPPELELQRR 118
>UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Halobacterium salinarium (Halobacterium halobium)
Length = 335
Score = 85.8 bits (203), Expect = 6e-16
Identities = 45/108 (41%), Positives = 58/108 (53%)
Frame = +3
Query: 57 PAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 236
P GSMGF P+KR+ + ++P DD V L F GYKAGMTHVV D+ +
Sbjct: 7 PRKGSMGFSPRKRAESEVPRFNSWPADDGE--VGLQGFAGYKAGMTHVVLVDDKANAPTE 64
Query: 237 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRR 380
E VT++ETPPM V Y +TP+G + L VWA+ E R
Sbjct: 65 GMETTVPVTVVETPPMRAAAVRLYEDTPYGKKPLTEVWADDTHESLDR 112
>UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanopyrus kandleri
Length = 361
Score = 79.8 bits (188), Expect = 4e-14
Identities = 38/100 (38%), Positives = 55/100 (55%)
Frame = +3
Query: 57 PAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 236
P GS+ F P+KR+ R +++++P ++ V + F GYKAGMTH + D P S
Sbjct: 12 PRRGSLAFSPRKRASRPVPRIRSWPDEER---VRVQGFAGYKAGMTHAIMIDDWPNSPTE 68
Query: 237 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAE 356
+EI VTI++ PPM + Y TP G R + WAE
Sbjct: 69 GEEISVPVTILDAPPMYVAAIRAYAPTPDGYRCVTEAWAE 108
>UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L3P - Ignicoccus hospitalis KIN4/I
Length = 358
Score = 74.5 bits (175), Expect = 1e-12
Identities = 44/100 (44%), Positives = 57/100 (57%), Gaps = 2/100 (2%)
Frame = +3
Query: 57 PAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 236
P GS G P+KR+ +V+++P D KP+ AF+GYK GMTHV+ DR
Sbjct: 9 PRRGSAGLRPRKRAASIVPRVRSWPSIDEVKPL---AFLGYKVGMTHVIMIDDREHVDTA 65
Query: 237 KKEIVEAVTIIETPPMVCVG--VVGYIETPHGLRALLTVW 350
+EI VT+IETPPMV +G V GY + G AL VW
Sbjct: 66 GQEIFVPVTVIETPPMVVLGARVYGY-DPNRGRYALTEVW 104
>UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofilum
pendens Hrk 5|Rep: 50S ribosomal protein L3 -
Thermofilum pendens (strain Hrk 5)
Length = 334
Score = 74.1 bits (174), Expect = 2e-12
Identities = 39/110 (35%), Positives = 57/110 (51%)
Frame = +3
Query: 57 PAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 236
P GS +YP+KR+R +V+ +P++ F GYK GM HV+ S
Sbjct: 7 PRRGSRAYYPRKRARSIVARVRRWPQNREG----FLGFAGYKVGMLHVIGVEMNKNSPFY 62
Query: 237 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRF 386
+E A T+IE PP+ V V Y +TP+G + L VWA+ + +D R F
Sbjct: 63 GQERFYAATVIEVPPLKVVAVRVYEKTPYGKKTLCEVWAKDLPKDLERVF 112
>UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanococcus jannaschii
Length = 335
Score = 74.1 bits (174), Expect = 2e-12
Identities = 41/115 (35%), Positives = 67/115 (58%), Gaps = 2/115 (1%)
Frame = +3
Query: 45 NFQHPAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPG 224
N P GS+ F P+KR++R +++++P++D V L AF YKAGM+H + D P
Sbjct: 4 NINRPRRGSLAFSPRKRAKRPVPRIRSWPEEDT---VRLQAFPVYKAGMSHAFIKEDNPK 60
Query: 225 SKINKKEIVEAVTIIETPPM-VC-VGVVGYIETPHGLRALLTVWAEHMSEDCRRR 383
S +E+ +TI+E PP+ VC + V G E + L L VWA+++ ++ R+
Sbjct: 61 SPNAGQEVFTPITILEAPPINVCAIRVYGRNERNY-LTTLTEVWADNLDKELERK 114
>UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4;
Thermococcaceae|Rep: 50S ribosomal protein L3P -
Pyrococcus furiosus
Length = 365
Score = 73.3 bits (172), Expect = 3e-12
Identities = 37/84 (44%), Positives = 52/84 (61%)
Frame = +3
Query: 57 PAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 236
P GS+GF P+KR++ +++++PK+ V + F GYKAGMTH++ D PG N
Sbjct: 7 PRRGSLGFSPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPG-LTN 62
Query: 237 KKEIVEAVTIIETPPMVCVGVVGY 308
KEI VTIIETPP+ G+ Y
Sbjct: 63 GKEIFMPVTIIETPPLRVFGIRAY 86
>UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Uncultured methanogenic archaeon RC-I
Length = 337
Score = 70.9 bits (166), Expect = 2e-11
Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
Frame = +3
Query: 57 PAHGSMGFYPKKRSRRHRGKVKAFPK--DDPSKPVHLTAFIGYKAGMTHVVREPDRPGSK 230
P GS+G+ P+ R+R + K++ + + D P + F+G+KAGM+H+V DRP S
Sbjct: 7 PRRGSLGYSPRVRARSQKPKMRNWAELGDQPK----IQGFVGFKAGMSHIVMVDDRPHSA 62
Query: 231 INKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSE-DCRRRFYKNWYK 404
EI VTI+E P M G+ Y ++P+G + + W + + KN YK
Sbjct: 63 TEGMEISVPVTIVEAPQMHVAGIRVYDDSPYGKKVIGEAWISDLKMLESLTHLPKNGYK 121
>UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L3
- Candidatus Nitrosopumilus maritimus SCM1
Length = 331
Score = 66.5 bits (155), Expect = 4e-10
Identities = 33/100 (33%), Positives = 56/100 (56%)
Frame = +3
Query: 57 PAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 236
P GS+ + P+ R++ +++A+PK D +P + A G+KAG +V DR
Sbjct: 9 PRRGSLAYSPRVRAKSMEARIRAWPKLDSEEP-KILAHCGFKAGCVQIVSIDDREKVPNA 67
Query: 237 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAE 356
K++V T++ TPP++ +G+ GY + GL A V+AE
Sbjct: 68 GKQLVSLGTVLVTPPVLILGIRGYSKDHDGLHAEFDVYAE 107
>UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5;
Thermoprotei|Rep: 50S ribosomal protein L3P - Sulfolobus
solfataricus
Length = 351
Score = 65.3 bits (152), Expect = 9e-10
Identities = 33/84 (39%), Positives = 45/84 (53%)
Frame = +3
Query: 57 PAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 236
P GS G P+KRS + +P+ + P L F+GYK GMTHV D P S N
Sbjct: 9 PRRGSAGLRPRKRSSELLPTPRTWPQINSQNP-KLLGFVGYKVGMTHVFMIDDWPNSPTN 67
Query: 237 KKEIVEAVTIIETPPMVCVGVVGY 308
KEI VT++E PP++ + + Y
Sbjct: 68 GKEIYMPVTVLEVPPIIPLALRAY 91
>UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L3P -
Nanoarchaeum equitans
Length = 321
Score = 64.9 bits (151), Expect = 1e-09
Identities = 41/131 (31%), Positives = 68/131 (51%), Gaps = 3/131 (2%)
Frame = +3
Query: 57 PAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 236
P GSMGF+P+KR+ R ++K +PK + KP+ AF YK GMTH + IN
Sbjct: 9 PRRGSMGFWPRKRASRIYPRIKTWPKIEEIKPL---AFAAYKVGMTHTI-------LNIN 58
Query: 237 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRF--YKNWYKCX 410
+ + VT++E P ++ +G Y + L+ + +++ + + R+ KN+
Sbjct: 59 GERVFTPVTVLEAPELLVIGAKAYKKENGALKEISSLYFNDLPQYVFRKIPKLKNYNFEE 118
Query: 411 KKAXF-TKAXN 440
KK F +KA N
Sbjct: 119 KKEQFLSKADN 129
>UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1;
Staphylothermus marinus F1|Rep: 50S ribosomal protein L3
- Staphylothermus marinus (strain ATCC 43588 / DSM 3639
/ F1)
Length = 395
Score = 63.3 bits (147), Expect = 4e-09
Identities = 39/120 (32%), Positives = 63/120 (52%), Gaps = 19/120 (15%)
Frame = +3
Query: 48 FQHPAHGSMGFYPKKRSRRHRGKVKAFP------------------KDDPSKPVHLTAFI 173
+ P HGS+G P+KR+ + +++++P K KPV L ++
Sbjct: 6 YSAPRHGSLGVRPRKRAAKIVPRIRSWPTQSWFDLLVEKLGDEAVNKGIAPKPV-LLGYV 64
Query: 174 GYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGY-IETPHGLRALLTVW 350
YKAGM+H + DRP + + KEI VT+++ PP++ +G+ GY I HGL + VW
Sbjct: 65 AYKAGMSHAIIIDDRPHTFTSGKEIAIPVTVLDAPPILILGLRGYKIHPMHGLLSFGEVW 124
>UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L3P -
Thermoplasma volcanium
Length = 331
Score = 62.9 bits (146), Expect = 5e-09
Identities = 33/107 (30%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
Frame = +3
Query: 54 HPAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKI 233
H GSM +YP+ R++ +++++P + S PV + F G+K GMTHV R S
Sbjct: 6 HSRRGSMAYYPRVRAKSIEPRIRSWP--EISGPVKVQGFAGFKVGMTHVEMVDYRKTSVT 63
Query: 234 NKKEIVEAVTIIETPPMVCVGVVGYIETPHG-LRALLTVWAEHMSED 371
+ I VT+IE PP+ +G+ Y E G + + W +++ ++
Sbjct: 64 AGQPIFVPVTVIEVPPLDVIGIRLYDEDEEGNMVVVYEKWTQNLDKE 110
>UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella
natans|Rep: Ribosomal protein L3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 370
Score = 60.1 bits (139), Expect = 3e-08
Identities = 34/100 (34%), Positives = 52/100 (52%)
Frame = +3
Query: 48 FQHPAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 227
F+HP GS+GF PKKRS R K + + +++ F K THV+R + S
Sbjct: 6 FEHPRIGSLGFLPKKRSNRIFPSSKTYKEIIHIYYPYISQFASLKVASTHVLRICNIVSS 65
Query: 228 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTV 347
K + I++ VT++E PP+ VG+ Y + L L T+
Sbjct: 66 KSYQNPIIDEVTLMECPPIEVVGLCAYALSSGHLVKLKTI 105
>UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarchaeum
symbiosum|Rep: 50S ribosomal protein L3 - Cenarchaeum
symbiosum
Length = 328
Score = 58.8 bits (136), Expect = 8e-08
Identities = 31/108 (28%), Positives = 56/108 (51%)
Frame = +3
Query: 48 FQHPAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 227
F P GS+ + P+ R+R +++ +P+ +P L A G+KAG +V DR +
Sbjct: 6 FSQPRRGSLAYSPRGRARSMEARIRGWPERQ-GEP-RLLAHAGFKAGCIQIVSIDDREHT 63
Query: 228 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSED 371
K++V T++ TPP+ +G+ GY + +G V+AE + +
Sbjct: 64 PNAGKQLVSLGTVLVTPPLHVLGMRGYSKGHYGRHVKFDVFAEDLPRE 111
>UniRef50_Q78TB4 Cluster: 16 days embryo head cDNA, RIKEN
full-length enriched library, clone:C130041A08
product:weakly similar to 60S RIBOSOMAL PROTEIN L3; n=1;
Mus musculus|Rep: 16 days embryo head cDNA, RIKEN
full-length enriched library, clone:C130041A08
product:weakly similar to 60S RIBOSOMAL PROTEIN L3 - Mus
musculus (Mouse)
Length = 109
Score = 39.9 bits (89), Expect = 0.038
Identities = 20/46 (43%), Positives = 27/46 (58%)
Frame = +3
Query: 105 HRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKK 242
HR + K FPK+D K HL F+ +A MT+ V E +R G K +K
Sbjct: 8 HRIQAKDFPKEDLPKSAHLIVFLVSRAVMTYFVWEINRSGPKWTRK 53
>UniRef50_Q69NC6 Cluster: Putative uncharacterized protein
OJ1742_G01.32; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Putative uncharacterized protein
OJ1742_G01.32 - Oryza sativa subsp. japonica (Rice)
Length = 100
Score = 35.5 bits (78), Expect = 0.83
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +2
Query: 239 ERDRGGCHHHRDSSDGLCRCCWIH*DPSWTTRSVD 343
E DRG CHH+ S GLCR C + P+ T V+
Sbjct: 36 EGDRGCCHHYLTGSPGLCRRCPLRAHPAATGFEVE 70
>UniRef50_Q54JS8 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 1205
Score = 34.3 bits (75), Expect = 1.9
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +3
Query: 90 KRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTH--VVREPDRPGSKINKKEIVEAVT 263
K +++ K+K +++ K + AFI A ++ +R DR ++N I + T
Sbjct: 19 KANKKKAAKLKKLEQNEALKGRNPKAFISQAAYASNRLTIRNLDREAKRVNLPVIDRSGT 78
Query: 264 IIETPPMVCVGVVG 305
+ETPP V + VVG
Sbjct: 79 AVETPPYV-IAVVG 91
>UniRef50_UPI00015B6051 Cluster: PREDICTED: similar to
ENSANGP00000006197; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to ENSANGP00000006197 - Nasonia
vitripennis
Length = 1307
Score = 33.5 bits (73), Expect = 3.3
Identities = 20/50 (40%), Positives = 26/50 (52%)
Frame = -2
Query: 417 PSXCICTSFCRSDVDSLQTYAPPRQSTERVVHEGSQCIQQHRHKPSEESR 268
PS I T SD++ L P QS+ V+ +GS+ HR K SEE R
Sbjct: 840 PSASINTKKYESDIEILSN---PSQSSIEVLDDGSKSTTPHRKKSSEERR 886
>UniRef50_A2YFM3 Cluster: Putative uncharacterized protein; n=3;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 310
Score = 33.5 bits (73), Expect = 3.3
Identities = 13/29 (44%), Positives = 22/29 (75%)
Frame = +2
Query: 8 FSLRLSSSMSHRKFSAPRSWVYGILSQKE 94
FSL L+ S S+R+F P+SWV+G+ + ++
Sbjct: 165 FSLGLNLSTSNRQFVPPKSWVFGMAAMRK 193
>UniRef50_Q5Y974 Cluster: Structural polyprotein; n=13; Solenopsis
invicta virus 1|Rep: Structural polyprotein - Solenopsis
invicta virus 1
Length = 1137
Score = 33.1 bits (72), Expect = 4.4
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = -3
Query: 284 HRRSLDDGDSLHDLFLVDF*TGTVRFSNHVGHTGLITDKSSQMNRFARVV 135
HRR + ++ D+ LVD T++ VG GLITD +S ++ A V
Sbjct: 475 HRRDVTAARAIADMILVDERDATMQVQAEVGGQGLITDIASTVSAVAGAV 524
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 552,341,472
Number of Sequences: 1657284
Number of extensions: 11121767
Number of successful extensions: 27589
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 26778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27563
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 36238783989
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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