Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_J07
         (553 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    25   0.44 
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   1.8  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    23   2.3  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   9.5  
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    21   9.5  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   9.5  

>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 25.0 bits (52), Expect = 0.44
 Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
 Frame = +3

Query: 174 GYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRAL-LTVW 350
           G K  +  ++ +P+    K+N  E  E   +      V +    +    HGL  L   +W
Sbjct: 135 GIKLSINIILSDPNTNKLKLNTNESYELTVLKSDSLAVRLSAANFFGARHGLETLNQLIW 194

Query: 351 AEHMSEDCR 377
            + +  + R
Sbjct: 195 FDEVVNELR 203


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 144 SKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVE 254
           S P HL    GY   +  + R PD+   KIN K  ++
Sbjct: 594 SHPFHLH---GYAFNVVGIGRSPDQNVKKINLKHALD 627


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 144 SKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVE 254
           S P HL    GY   +  + R PD+   KIN K  ++
Sbjct: 594 SHPFHLH---GYAFNVIGIGRSPDQNVKKINLKHALD 627


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 236 VDF*TGTVRFSNHVG 192
           +DF T TVR  N VG
Sbjct: 5   MDFDTRTVRLRNRVG 19


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 129 GTP*PYHDDDGTSFWDRIP*THERGAENFLCDM 31
           G P PY  + G+  ++ I   H  G   FL DM
Sbjct: 280 GEPGPYTVNLGSLGYNEICEFHRNGTVVFLDDM 312


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +3

Query: 141 PSKPVHLTAFIGYKAG 188
           P +P+H  ++ GY  G
Sbjct: 75  PFRPMHQNSYTGYHLG 90


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,251
Number of Sequences: 336
Number of extensions: 2685
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13621010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)