Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_J07
(553 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal prote... 259 8e-70
Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal prote... 259 8e-70
Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical p... 259 8e-70
Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical pr... 259 8e-70
Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical p... 254 3e-68
Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical pr... 254 3e-68
Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical p... 58 4e-09
Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical pr... 58 4e-09
Z46937-1|CAA87056.2| 1036|Caenorhabditis elegans Hypothetical pr... 31 0.42
AF003146-5|AAB54199.1| 299|Caenorhabditis elegans Hypothetical ... 30 0.96
Z68748-4|CAD27622.1| 617|Caenorhabditis elegans Hypothetical pr... 27 9.0
Z68748-3|CAA92953.2| 615|Caenorhabditis elegans Hypothetical pr... 27 9.0
>Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 259 bits (635), Expect = 8e-70
Identities = 113/168 (67%), Positives = 137/168 (81%)
Frame = +3
Query: 48 FQHPAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 227
F P HG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D+PGS
Sbjct: 6 FSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGS 65
Query: 228 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYKC 407
K+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY NW K
Sbjct: 66 KVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKS 125
Query: 408 XKKAXFTKAXNKWQDELGRQSIQKDFXNMIRYCXVVRVIAHTQMKLLK 551
KKA FTK KWQDE G++ I+ DF + +YC +RVIAHTQMK+L+
Sbjct: 126 KKKA-FTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILR 172
>Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 259 bits (635), Expect = 8e-70
Identities = 113/168 (67%), Positives = 137/168 (81%)
Frame = +3
Query: 48 FQHPAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 227
F P HG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D+PGS
Sbjct: 6 FSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGS 65
Query: 228 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYKC 407
K+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY NW K
Sbjct: 66 KVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKS 125
Query: 408 XKKAXFTKAXNKWQDELGRQSIQKDFXNMIRYCXVVRVIAHTQMKLLK 551
KKA FTK KWQDE G++ I+ DF + +YC +RVIAHTQMK+L+
Sbjct: 126 KKKA-FTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILR 172
>Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 259 bits (635), Expect = 8e-70
Identities = 113/168 (67%), Positives = 137/168 (81%)
Frame = +3
Query: 48 FQHPAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 227
F P HG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D+PGS
Sbjct: 6 FSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGS 65
Query: 228 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYKC 407
K+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY NW K
Sbjct: 66 KVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKS 125
Query: 408 XKKAXFTKAXNKWQDELGRQSIQKDFXNMIRYCXVVRVIAHTQMKLLK 551
KKA FTK KWQDE G++ I+ DF + +YC +RVIAHTQMK+L+
Sbjct: 126 KKKA-FTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILR 172
>Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 259 bits (635), Expect = 8e-70
Identities = 113/168 (67%), Positives = 137/168 (81%)
Frame = +3
Query: 48 FQHPAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 227
F P HG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D+PGS
Sbjct: 6 FSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGS 65
Query: 228 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYKC 407
K+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY NW K
Sbjct: 66 KVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKS 125
Query: 408 XKKAXFTKAXNKWQDELGRQSIQKDFXNMIRYCXVVRVIAHTQMKLLK 551
KKA FTK KWQDE G++ I+ DF + +YC +RVIAHTQMK+L+
Sbjct: 126 KKKA-FTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILR 172
>Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 254 bits (622), Expect = 3e-68
Identities = 111/164 (67%), Positives = 133/164 (81%)
Frame = +3
Query: 48 FQHPAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 227
F P HG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D+PGS
Sbjct: 6 FSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGS 65
Query: 228 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYKC 407
K+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY NW K
Sbjct: 66 KVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKS 125
Query: 408 XKKAXFTKAXNKWQDELGRQSIQKDFXNMIRYCXVVRVIAHTQM 539
KKA FTK KWQDE G++ I+ DF + +YC +RVIAHTQM
Sbjct: 126 KKKA-FTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQM 168
>Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 254 bits (622), Expect = 3e-68
Identities = 111/164 (67%), Positives = 133/164 (81%)
Frame = +3
Query: 48 FQHPAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 227
F P HG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D+PGS
Sbjct: 6 FSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGS 65
Query: 228 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYKC 407
K+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY NW K
Sbjct: 66 KVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKS 125
Query: 408 XKKAXFTKAXNKWQDELGRQSIQKDFXNMIRYCXVVRVIAHTQM 539
KKA FTK KWQDE G++ I+ DF + +YC +RVIAHTQM
Sbjct: 126 KKKA-FTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQM 168
>Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 58.0 bits (134), Expect = 4e-09
Identities = 24/43 (55%), Positives = 32/43 (74%)
Frame = +3
Query: 423 FTKAXNKWQDELGRQSIQKDFXNMIRYCXVVRVIAHTQMKLLK 551
FTK KWQDE G++ I+ DF + +YC +RVIAHTQMK+L+
Sbjct: 32 FTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILR 74
Score = 46.4 bits (105), Expect = 1e-05
Identities = 19/29 (65%), Positives = 22/29 (75%)
Frame = +3
Query: 48 FQHPAHGSMGFYPKKRSRRHRGKVKAFPK 134
F P HG MGF PKKRSR +RG++KAF K
Sbjct: 6 FSAPRHGHMGFTPKKRSRTYRGRIKAFTK 34
>Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 58.0 bits (134), Expect = 4e-09
Identities = 24/43 (55%), Positives = 32/43 (74%)
Frame = +3
Query: 423 FTKAXNKWQDELGRQSIQKDFXNMIRYCXVVRVIAHTQMKLLK 551
FTK KWQDE G++ I+ DF + +YC +RVIAHTQMK+L+
Sbjct: 32 FTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILR 74
Score = 46.4 bits (105), Expect = 1e-05
Identities = 19/29 (65%), Positives = 22/29 (75%)
Frame = +3
Query: 48 FQHPAHGSMGFYPKKRSRRHRGKVKAFPK 134
F P HG MGF PKKRSR +RG++KAF K
Sbjct: 6 FSAPRHGHMGFTPKKRSRTYRGRIKAFTK 34
>Z46937-1|CAA87056.2| 1036|Caenorhabditis elegans Hypothetical
protein F43C1.1 protein.
Length = 1036
Score = 31.5 bits (68), Expect = 0.42
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 367 KTVDVASTKTGTNAXRRLXSLKPXTNGRMSLDANQYKKI 483
K +++AST T + A R LK NGR +D ++Y +I
Sbjct: 756 KRLEIASTGTMSAAIARNQKLKMIINGRYEIDDDEYSRI 794
>AF003146-5|AAB54199.1| 299|Caenorhabditis elegans Hypothetical
protein F56F4.2 protein.
Length = 299
Score = 30.3 bits (65), Expect = 0.96
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +3
Query: 273 TPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWY 401
T P + GY++ G+R VW E S+ + KNW+
Sbjct: 201 TDPNGYFDIAGYVDQSSGVRGRFWVWHECFSQKYHKDPCKNWF 243
>Z68748-4|CAD27622.1| 617|Caenorhabditis elegans Hypothetical
protein F13H10.3b protein.
Length = 617
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = -3
Query: 398 PVFVEATSTVFRHMLR--PDSQQSA 330
P F E T +VFRH R PD + SA
Sbjct: 3 PFFAEFTESVFRHFRRNEPDEENSA 27
>Z68748-3|CAA92953.2| 615|Caenorhabditis elegans Hypothetical
protein F13H10.3a protein.
Length = 615
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = -3
Query: 398 PVFVEATSTVFRHMLR--PDSQQSA 330
P F E T +VFRH R PD + SA
Sbjct: 3 PFFAEFTESVFRHFRRNEPDEENSA 27
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,709,737
Number of Sequences: 27780
Number of extensions: 265476
Number of successful extensions: 600
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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