Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_J06
         (357 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc...    71   4e-14
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S...    62   2e-11
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|...    58   4e-10
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   0.86 
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar...    27   0.86 
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    25   4.6  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    24   8.0  

>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
           Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 71.3 bits (167), Expect = 4e-14
 Identities = 31/60 (51%), Positives = 45/60 (75%)
 Frame = +1

Query: 127 DDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLITNIGSGVGAAPAAGWSA 306
           D+ + +T +K+ ++ KAA V VEP W  +FAKALEG ++++L+ NIGSG GAAP AG +A
Sbjct: 17  DEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLNIGSGAGAAPVAGGAA 76


>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
           Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 62.5 bits (145), Expect = 2e-11
 Identities = 29/57 (50%), Positives = 42/57 (73%)
 Frame = +1

Query: 127 DDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLITNIGSGVGAAPAAG 297
           D+ + +T +K+ ++ KAA V VEP W  +FAKALEG ++++L+ NIGS   AAPAAG
Sbjct: 17  DEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLNIGS-AAAAPAAG 72


>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
           Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 109

 Score = 58.0 bits (134), Expect = 4e-10
 Identities = 26/57 (45%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
 Frame = +1

Query: 127 DDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLITNIGS-GVGAAPAA 294
           D+ + +T +K+ ++ KA  V VEP W  +FAKALEG ++++L+ NIGS G  +AP A
Sbjct: 17  DEGIEITSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLKELLLNIGSAGAASAPTA 73


>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 315

 Score = 27.1 bits (57), Expect = 0.86
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 24  VLSCS*GLRQLARSKLKMVSKAELXCVYSAL 116
           +L C  G+ QL    + ++SKA+L C Y  L
Sbjct: 153 LLVCLKGMLQLDMPHVNILSKADLLCTYGTL 183


>SPAC22F3.05c |alp41||ADP-ribosylation factor
           Alp41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 186

 Score = 27.1 bits (57), Expect = 0.86
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = +1

Query: 82  QKLNXHVFTLLSSWLDDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLIT 258
           +KL      +L++  D   A++ E+IS IL  +      +W      AL G+N++D I+
Sbjct: 113 EKLLFTSILVLANKSDVSGALSSEEISKILNISKYK-SSHWRIFSVSALTGLNIKDAIS 170


>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 250 GHGH*CLPRLWRTDL 206
           G+G  CLP LWR D+
Sbjct: 402 GNGVQCLPLLWRQDI 416


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 214 TDLANMALHXQPPLSRWWKFSHQ 146
           T+L  + ++ Q P   W KF+H+
Sbjct: 38  TELCEILVNEQAPREFWTKFAHE 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,226,664
Number of Sequences: 5004
Number of extensions: 21843
Number of successful extensions: 47
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)