Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_J06
(357 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0113 + 897970-898038,898148-898271,898811-898896,898996-89... 76 9e-15
11_01_0483 - 3718104-3718802,3718817-3719308 30 0.47
07_01_0362 - 2667031-2667090,2667182-2667426,2667749-2669471,266... 27 3.3
04_04_1393 - 33204699-33204806,33204927-33205164,33205581-332058... 27 3.3
05_01_0555 + 4867494-4867577,4868987-4869607 27 4.3
07_03_1291 + 25545749-25546262,25546989-25547669,25547693-255477... 27 5.7
07_03_0035 - 12677942-12678568 26 7.6
01_06_1007 - 33733500-33733604,33733837-33733917,33734191-337342... 26 7.6
>08_01_0113 +
897970-898038,898148-898271,898811-898896,898996-899049
Length = 110
Score = 75.8 bits (178), Expect = 9e-15
Identities = 35/60 (58%), Positives = 45/60 (75%)
Frame = +1
Query: 127 DDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLITNIGSGVGAAPAAGWSA 306
DD + +T EKI+T++KAA + VE YWPGLFAK LE +V DLI ++GSG GAAP A +A
Sbjct: 17 DDGIPITSEKIATLVKAANIKVEAYWPGLFAKLLEHRSVDDLILSVGSGGGAAPVAAAAA 76
>11_01_0483 - 3718104-3718802,3718817-3719308
Length = 396
Score = 30.3 bits (65), Expect = 0.47
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 38 LRPTATCTFKTKNGVKS*IXMCLLCSHPGWMMMLP 142
LRP AT T +GV +PGW+M++P
Sbjct: 4 LRPVATATATLPSGVPPPAAAAAARGYPGWVMLMP 38
>07_01_0362 -
2667031-2667090,2667182-2667426,2667749-2669471,
2669578-2669921,2670544-2670667,2671350-2671599,
2672486-2672571
Length = 943
Score = 27.5 bits (58), Expect = 3.3
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +1
Query: 79 CQKLNXH-VFTLLSSWLDDDVAVTGEKISTILKAAAVXVEPYWPG 210
C+ H +FT L+SW +VA GE + L A+ + P W G
Sbjct: 134 CESCGAHLIFTALTSWSPAEVANAGEAFAEQLDASHLGDCP-WRG 177
>04_04_1393 -
33204699-33204806,33204927-33205164,33205581-33205825,
33206229-33206339,33206645-33206743,33207684-33207731,
33207882-33207999,33208085-33208115,33208700-33208806,
33209644-33209725,33210010-33210104,33210579-33210664,
33211074-33211195,33211613-33211824,33212362-33212510,
33212755-33212982
Length = 692
Score = 27.5 bits (58), Expect = 3.3
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +1
Query: 76 WCQKLNXHVF--TLLSSWLDDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRD 249
W + N H + L SWLDD +A+ + +S + V P + G AL
Sbjct: 258 WSRMANMHGWGGPLPQSWLDDQLALQKKILSRMYAFGMFPVLPAFSGNIPAALRSKFPSA 317
Query: 250 LITNIGS 270
+T++G+
Sbjct: 318 KVTHLGN 324
>05_01_0555 + 4867494-4867577,4868987-4869607
Length = 234
Score = 27.1 bits (57), Expect = 4.3
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -2
Query: 251 RSRTLMPSKALANRPGQYGSTXTAAAFKMVEIFSPVTATSSSSQD 117
R +MP+ A+ ST A F ++ ++ PVT +S S D
Sbjct: 175 RVAAVMPAPAMRAAVWGMTSTVAVAGFYLLFVYRPVTISSYSEMD 219
>07_03_1291 +
25545749-25546262,25546989-25547669,25547693-25547751,
25549152-25549242,25549330-25549743,25550191-25550243,
25550947-25551177,25551492-25551708,25551790-25551890,
25552446-25552532,25553536-25553676,25553839-25553961,
25554070-25554522,25554931-25555308,25555410-25556060,
25556264-25556368,25556482-25556707,25557204-25557241
Length = 1520
Score = 26.6 bits (56), Expect = 5.7
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -1
Query: 225 GFGEQTWPIW--LYXYSRRFQDGGNFLTSYG 139
G G+ +W +Y +S + QDG NF+ G
Sbjct: 627 GAGKGLMTVWHAMYSHSSKIQDGSNFIDETG 657
>07_03_0035 - 12677942-12678568
Length = 208
Score = 26.2 bits (55), Expect = 7.6
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +2
Query: 203 GQVCSPKPWKASMSVT*SPTSALEWVLLRP 292
G V SP + A M SPT+A W LLRP
Sbjct: 96 GVVASPARFGAVMLA--SPTAANRWFLLRP 123
>01_06_1007 -
33733500-33733604,33733837-33733917,33734191-33734238,
33734364-33734549,33735148-33735678,33735823-33735864,
33735945-33736065,33736200-33736281,33737169-33737227,
33738492-33738564,33738694-33738913
Length = 515
Score = 26.2 bits (55), Expect = 7.6
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 209 VCSPKPWKASMSVT*SPTSALEWVLLRPL 295
VC +P SP +L WVLLRP+
Sbjct: 482 VCKLRPTALLADGVASPLRSLAWVLLRPI 510
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,081,419
Number of Sequences: 37544
Number of extensions: 185274
Number of successful extensions: 479
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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