Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_J06
         (357 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.         24   1.5  
AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA topoi...    22   6.0  
U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.         22   7.9  
U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.         22   7.9  

>AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.
          Length = 679

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = -3

Query: 205 ANMALHXQPPLSRWWKFSHQLRQHHHP 125
           A+  LH QP  +      H    HHHP
Sbjct: 142 AHHPLHYQPAAAAAMHHHHHHPHHHHP 168


>AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA
           topoisomerase protein.
          Length = 1039

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 154 SHQLRQHHHPA 122
           SHQ +QHH P+
Sbjct: 830 SHQQQQHHQPS 840


>U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 9/24 (37%), Positives = 11/24 (45%), Gaps = 2/24 (8%)
 Frame = -1

Query: 219 GEQTWPIWLY--XYSRRFQDGGNF 154
           G   WP W+Y   YS R   G  +
Sbjct: 461 GSNLWPAWVYCTRYSDRPSSGPRY 484


>U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 9/24 (37%), Positives = 11/24 (45%), Gaps = 2/24 (8%)
 Frame = -1

Query: 219 GEQTWPIWLY--XYSRRFQDGGNF 154
           G   WP W+Y   YS R   G  +
Sbjct: 461 GSNLWPAWVYCTRYSDRPSSGPRY 484


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 318,835
Number of Sequences: 2352
Number of extensions: 5731
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 57
effective length of database: 429,915
effective search space used: 26224815
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)