Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_J06
(357 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
S62170-1|AAB26902.1| 112|Drosophila melanogaster acidic ribosom... 110 4e-25
AY069125-1|AAL39270.1| 112|Drosophila melanogaster GH13422p pro... 110 4e-25
AE014134-102|AAF51499.1| 112|Drosophila melanogaster CG4087-PA ... 110 4e-25
Y00504-1|CAA68557.1| 112|Drosophila melanogaster protein ( Dros... 108 2e-24
AY600955-1|AAT12844.1| 1047|Drosophila melanogaster gag protein ... 29 1.7
U14101-1|AAC46493.1| 1043|Drosophila melanogaster putative singl... 27 5.3
AE013599-1971|AAF58192.3| 1945|Drosophila melanogaster CG10228-P... 27 5.3
U88868-1|AAC24943.1| 619|Drosophila melanogaster elongation fac... 27 7.0
AY070979-1|AAL48601.1| 619|Drosophila melanogaster RE07731p pro... 27 7.0
AE014134-2205|AAF53194.1| 619|Drosophila melanogaster CG6382-PA... 27 7.0
AE014134-11|AAF51568.2| 2833|Drosophila melanogaster CG31973-PB,... 27 7.0
>S62170-1|AAB26902.1| 112|Drosophila melanogaster acidic ribosomal
protein rpA2 protein.
Length = 112
Score = 110 bits (265), Expect = 4e-25
Identities = 52/58 (89%), Positives = 55/58 (94%)
Frame = +1
Query: 124 LDDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLITNIGSGVGAAPAAG 297
+DDDVAVTGEKI+TILKAA V VEPYWPGLFAKALEGINV+DLITNIGSGVGAAPA G
Sbjct: 17 VDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEGINVKDLITNIGSGVGAAPAGG 74
>AY069125-1|AAL39270.1| 112|Drosophila melanogaster GH13422p
protein.
Length = 112
Score = 110 bits (265), Expect = 4e-25
Identities = 52/58 (89%), Positives = 55/58 (94%)
Frame = +1
Query: 124 LDDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLITNIGSGVGAAPAAG 297
+DDDVAVTGEKI+TILKAA V VEPYWPGLFAKALEGINV+DLITNIGSGVGAAPA G
Sbjct: 17 VDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEGINVKDLITNIGSGVGAAPAGG 74
>AE014134-102|AAF51499.1| 112|Drosophila melanogaster CG4087-PA
protein.
Length = 112
Score = 110 bits (265), Expect = 4e-25
Identities = 52/58 (89%), Positives = 55/58 (94%)
Frame = +1
Query: 124 LDDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLITNIGSGVGAAPAAG 297
+DDDVAVTGEKI+TILKAA V VEPYWPGLFAKALEGINV+DLITNIGSGVGAAPA G
Sbjct: 17 VDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEGINVKDLITNIGSGVGAAPAGG 74
>Y00504-1|CAA68557.1| 112|Drosophila melanogaster protein (
Drosophila melanogastermRNA for A-type ribosomal protein
rp21C. ).
Length = 112
Score = 108 bits (259), Expect = 2e-24
Identities = 51/58 (87%), Positives = 54/58 (93%)
Frame = +1
Query: 124 LDDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLITNIGSGVGAAPAAG 297
+DDDVAVTGEKI+TILKAA V VEPYWPGLFAKALE INV+DLITNIGSGVGAAPA G
Sbjct: 17 VDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEAINVKDLITNIGSGVGAAPAGG 74
>AY600955-1|AAT12844.1| 1047|Drosophila melanogaster gag protein
protein.
Length = 1047
Score = 29.1 bits (62), Expect = 1.7
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -2
Query: 257 VIRSRTLMPSKALANRPGQYGSTXTAAAFKMVEI-FSPVTATSSSSQDESRVN 102
+I S+ L+P+K N P QY T A K +I FS + S +S N
Sbjct: 255 LIASQNLVPAKTHINSPTQYNDTNATNALKTAKINFSSHSHQSEIKPTQSAKN 307
>U14101-1|AAC46493.1| 1043|Drosophila melanogaster putative
single-stranded nucleicacid binding protein protein.
Length = 1043
Score = 27.5 bits (58), Expect = 5.3
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -2
Query: 248 SRTLMPSKALANRPGQYGSTXTAAAFKMVEI-FSPVTATSSSSQDESRVN 102
S+ L+P+K N P QY T A K +I FS + S +S N
Sbjct: 258 SQNLVPAKTHINTPTQYNDTNATNALKTAKINFSSHSHQSEIKPTQSAKN 307
>AE013599-1971|AAF58192.3| 1945|Drosophila melanogaster CG10228-PA
protein.
Length = 1945
Score = 27.5 bits (58), Expect = 5.3
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Frame = -2
Query: 251 RSRTLMPSKALANRPGQYGST--XTAAAFKMVEIFSPVTATSSSSQD 117
RSR+ P + ++R G+ GS+ ++++ K E S T++SSSS D
Sbjct: 344 RSRSKSPVRNSSSRSGKSGSSSHSSSSSRKRSESKSSTTSSSSSSSD 390
>U88868-1|AAC24943.1| 619|Drosophila melanogaster elongation factor
1 alpha-likefactor protein.
Length = 619
Score = 27.1 bits (57), Expect = 7.0
Identities = 18/67 (26%), Positives = 30/67 (44%)
Frame = +1
Query: 88 LNXHVFTLLSSWLDDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLITNIG 267
LN + + S+ + V E+ + ++ AAA E PG + + D + + G
Sbjct: 16 LNVNAVEFVPSFSYNSVVNVAEEAAAVVVAAAAAEETADPGPASGSATPATTPDSVGSGG 75
Query: 268 SGVGAAP 288
S GAAP
Sbjct: 76 STAGAAP 82
>AY070979-1|AAL48601.1| 619|Drosophila melanogaster RE07731p
protein.
Length = 619
Score = 27.1 bits (57), Expect = 7.0
Identities = 18/67 (26%), Positives = 30/67 (44%)
Frame = +1
Query: 88 LNXHVFTLLSSWLDDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLITNIG 267
LN + + S+ + V E+ + ++ AAA E PG + + D + + G
Sbjct: 16 LNVNAVEFVPSFSYNSVVNVAEEAAAVVVAAAAAEETADPGPASGSATPATTPDSVGSGG 75
Query: 268 SGVGAAP 288
S GAAP
Sbjct: 76 STAGAAP 82
>AE014134-2205|AAF53194.1| 619|Drosophila melanogaster CG6382-PA
protein.
Length = 619
Score = 27.1 bits (57), Expect = 7.0
Identities = 18/67 (26%), Positives = 30/67 (44%)
Frame = +1
Query: 88 LNXHVFTLLSSWLDDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLITNIG 267
LN + + S+ + V E+ + ++ AAA E PG + + D + + G
Sbjct: 16 LNVNAVEFVPSFSYNSVVNVAEEAAAVVVAAAAAEETADPGPASGSATPATTPDSVGSGG 75
Query: 268 SGVGAAP 288
S GAAP
Sbjct: 76 STAGAAP 82
>AE014134-11|AAF51568.2| 2833|Drosophila melanogaster CG31973-PB,
isoform B protein.
Length = 2833
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -3
Query: 205 ANMALHXQPPLSRWWKFSHQLRQHHH 128
AN A+H P H+ RQHHH
Sbjct: 1835 ANPAMHFVSPFKSLENLLHEDRQHHH 1860
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,381,267
Number of Sequences: 53049
Number of extensions: 292029
Number of successful extensions: 803
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 24,988,368
effective HSP length: 76
effective length of database: 20,956,644
effective search space used: 880179048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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