Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_J06
         (357 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal pro...    90   5e-19
U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal prote...    86   6e-18
L16559-10|AAA27927.1|  371|Caenorhabditis elegans Hypothetical p...    27   5.1  
Z83123-5|CAB05611.1|  332|Caenorhabditis elegans Hypothetical pr...    26   8.9  
U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical pr...    26   8.9  
U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    26   8.9  

>AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal
           protein, acidic protein 1 protein.
          Length = 111

 Score = 89.8 bits (213), Expect = 5e-19
 Identities = 39/60 (65%), Positives = 51/60 (85%)
 Frame = +1

Query: 127 DDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLITNIGSGVGAAPAAGWSA 306
           DD+VA+TGEKI+T+LKAA V  EPYWPGLFAKALEG++V++LIT++ SG G+ PA   +A
Sbjct: 18  DDEVAITGEKIATLLKAANVEFEPYWPGLFAKALEGVDVKNLITSVSSGAGSGPAPAAAA 77


>U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal protein
           P1 homolog protein.
          Length = 111

 Score = 86.2 bits (204), Expect = 6e-18
 Identities = 38/60 (63%), Positives = 50/60 (83%)
 Frame = +1

Query: 127 DDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLITNIGSGVGAAPAAGWSA 306
           DD+VA+TGEKI+T+LKAA V  EP WPGLFAKALEG++V++LIT++ SG G+ PA   +A
Sbjct: 18  DDEVAITGEKIATLLKAANVEFEPNWPGLFAKALEGVDVKNLITSVSSGAGSGPAPAAAA 77


>L16559-10|AAA27927.1|  371|Caenorhabditis elegans Hypothetical
           protein C06E1.11 protein.
          Length = 371

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +1

Query: 58  HVQN*KWCQ-KLNXHVFTLLSSWLDDDVAVTGEKISTILKAAAVXVEPYWPG 210
           H Q   W Q   + ++ T  ++ +  DVA    KI+ IL  AAV  E Y  G
Sbjct: 19  HQQGSYWTQGSTSSYLSTAKTAGVLGDVAEKANKIAPILTTAAVIYEMYQVG 70


>Z83123-5|CAB05611.1|  332|Caenorhabditis elegans Hypothetical
           protein T04A11.8 protein.
          Length = 332

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 142 RQHHHPARMRAE*THXNSAFDTIFS 68
           RQHH+P R+ A   H   +F+ I S
Sbjct: 180 RQHHYPYRLGAVYVHFIGSFNGIMS 204


>U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical
           protein C12D12.1a protein.
          Length = 769

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -2

Query: 233 PSKALANRPGQYGSTXTAAAFKMVEIFSPVTATSSSSQDESRVN 102
           P+K   + P   G++ TA A       +PV  TSS++   + VN
Sbjct: 625 PTKLPTSPPSTVGTSPTAPANLTTPTTAPVNPTSSTTAPTAPVN 668


>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -2

Query: 233 PSKALANRPGQYGSTXTAAAFKMVEIFSPVTATSSSSQDESRVN 102
           P+K   + P   G++ TA A       +PV  TSS++   + VN
Sbjct: 681 PTKLPTSPPSTVGTSPTAPANLTTPTTAPVNPTSSTTAPTAPVN 724


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,983,988
Number of Sequences: 27780
Number of extensions: 132062
Number of successful extensions: 348
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 482051610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)