Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_J06
         (357 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   1.9  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   5.8  
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    20   7.6  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +3

Query: 165 HLESGGCXCRAILARSVRQSLGRHQCP*PDHQHRLWSGCC 284
           +L SGGC C+      V +     +CP    +H   S  C
Sbjct: 241 YLPSGGCHCKPGYQADVEKQ-ECTECPIGKFKHEAGSHSC 279


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 20.6 bits (41), Expect = 5.8
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +1

Query: 199 YWPGLFAKALEGINVRDLITNIGSGVGAA 285
           +WP   + ALEG + +  I N    + A+
Sbjct: 223 FWPSFNSAALEGDDQQRAIINTLLSISAS 251


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 211 LFAKALEGINVRDLITNIGSGVGA 282
           LFA+ + GIN R++      G+ A
Sbjct: 37  LFARCMGGINSRNMDIEHDPGLAA 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,236
Number of Sequences: 438
Number of extensions: 1690
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8308335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)