Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_J05
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomy...    53   3e-08
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    25   6.8  
SPBC119.09c |||ORMDL family protein|Schizosaccharomyces pombe|ch...    25   9.0  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    25   9.0  

>SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 482

 Score = 53.2 bits (122), Expect = 3e-08
 Identities = 22/43 (51%), Positives = 32/43 (74%)
 Frame = -3

Query: 396 EYCNYRSPLSTRYASKEMQYNFSDQKKFSTWRKLWIYLAKAEK 268
           +Y +Y +PL+ RYAS EM + FS + + +TWR+LW+ LA AEK
Sbjct: 3   DYGSYSTPLTARYASAEMSHLFSREMRINTWRQLWLNLAIAEK 45


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = -3

Query: 453 EINSIK*PQLTRPVELQNTEYCNYRSPLSTRYASKEMQYNFSDQKKFS 310
           ++NS   P ++RP    +++    R+P+   Y  +   +N  DQ   S
Sbjct: 133 DVNSSHYPHISRPRTSSDSQKMYTRAPVDYYYIQENPYFNNIDQDSIS 180


>SPBC119.09c |||ORMDL family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 186

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +1

Query: 295 EFTPSRKFLLVTEIVL 342
           ++TP+RK+LLV  I+L
Sbjct: 115 QYTPARKYLLVLPIIL 130


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 111 IEYQNFLSYFFSI*DNINLFKIHRAFNVN 25
           +EYQ+ L  FF   D +NL  I  A N N
Sbjct: 839 LEYQSLLISFFEANDLLNLLWIFEAQNGN 867


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,376,846
Number of Sequences: 5004
Number of extensions: 48943
Number of successful extensions: 100
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)