Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_J05
         (626 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0460 - 17955102-17955146,17955253-17955310,17955442-179555...    28   5.3  
04_04_1045 - 30400162-30400434,30400763-30400835,30400931-304010...    28   5.3  
01_01_1191 + 9487835-9488467,9492584-9492787                           28   7.0  

>11_04_0460 -
           17955102-17955146,17955253-17955310,17955442-17955593,
           17955888-17955993,17956101-17956222,17956766-17956834,
           17956969-17957214,17957331-17957373,17957449-17957520,
           17957954-17958066,17958158-17958238,17958343-17958415,
           17959413-17959519,17960410-17960514,17960684-17960974,
           17961621-17961707,17961774-17961842,17961917-17961973,
           17962057-17962155,17962223-17962312,17962395-17962511,
           17964164-17964244,17964353-17964502,17964812-17964956,
           17967359-17967510,17967647-17967784,17967838-17967914,
           17968032-17968134
          Length = 1015

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -2

Query: 526 GYVAQYSVSCQLVCSIYKTL 467
           G VA +  SC+LVC+++KT+
Sbjct: 604 GRVAGWVASCELVCAVWKTI 623


>04_04_1045 -
           30400162-30400434,30400763-30400835,30400931-30401042,
           30401151-30401348,30401685-30401856
          Length = 275

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -1

Query: 554 RAQRRLFVLRLCGSVFRQLS 495
           RAQ +L+V+R+C  VF +LS
Sbjct: 121 RAQGKLYVVRICDKVFTELS 140


>01_01_1191 + 9487835-9488467,9492584-9492787
          Length = 278

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 333 NCTAFLWRHIVYSKVTGNYSIRYFAI 410
           +C A LWRH  Y +V  + + RY A+
Sbjct: 43  DCVASLWRHRTYDRVRLHLAKRYCAL 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,159,613
Number of Sequences: 37544
Number of extensions: 237915
Number of successful extensions: 450
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)