Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_J05
         (626 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71266-5|CAD56593.1|  370|Caenorhabditis elegans Hypothetical pr...    38   0.006
Z71266-4|CAA95843.1|  478|Caenorhabditis elegans Hypothetical pr...    38   0.006
Z73972-4|CAA98260.1|  666|Caenorhabditis elegans Hypothetical pr...    31   0.89 
Z73428-1|CAA97807.1|  219|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U32854-1|AAC46919.1|  219|Caenorhabditis elegans unc-119 protein.      29   2.7  

>Z71266-5|CAD56593.1|  370|Caenorhabditis elegans Hypothetical
           protein R06C7.5b protein.
          Length = 370

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -3

Query: 384 YRSPLSTRYASKEMQYNF-SDQKKFSTWRKLWIYLAKAEK 268
           + S LSTRY       +  S+  K + WR+LWI+LA+AEK
Sbjct: 7   FESVLSTRYCKNSPLVSILSETNKATLWRQLWIWLAEAEK 46


>Z71266-4|CAA95843.1|  478|Caenorhabditis elegans Hypothetical
           protein R06C7.5a protein.
          Length = 478

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -3

Query: 384 YRSPLSTRYASKEMQYNF-SDQKKFSTWRKLWIYLAKAEK 268
           + S LSTRY       +  S+  K + WR+LWI+LA+AEK
Sbjct: 7   FESVLSTRYCKNSPLVSILSETNKATLWRQLWIWLAEAEK 46


>Z73972-4|CAA98260.1|  666|Caenorhabditis elegans Hypothetical
           protein F15H10.7 protein.
          Length = 666

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 19/67 (28%), Positives = 34/67 (50%)
 Frame = -3

Query: 417 PVELQNTEYCNYRSPLSTRYASKEMQYNFSDQKKFSTWRKLWIYLAKAEKVRLVSYNPNY 238
           P+E+QN E+ + R P+ +    K+++   +  + FS    + +  AKA    L+     +
Sbjct: 561 PMEIQNVEFSSVRLPMLS--VLKDVKSEDTPLQSFSLQYHV-VVRAKAPSNALLESTLEH 617

Query: 237 KLKLNTW 217
            LK NTW
Sbjct: 618 NLKTNTW 624


>Z73428-1|CAA97807.1|  219|Caenorhabditis elegans Hypothetical
           protein M142.1 protein.
          Length = 219

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +2

Query: 401 FCNSTGRVNCGHFIEF--ISQILR*SLINTTNKLTAD 505
           FC    R NC H  EF  +SQ L   +IN  N+  +D
Sbjct: 162 FCMPNSRNNCEHIYEFPQLSQQLMDDMINNPNETRSD 198


>U32854-1|AAC46919.1|  219|Caenorhabditis elegans unc-119 protein.
          Length = 219

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +2

Query: 401 FCNSTGRVNCGHFIEF--ISQILR*SLINTTNKLTAD 505
           FC    R NC H  EF  +SQ L   +IN  N+  +D
Sbjct: 162 FCMPNSRNNCEHIYEFPQLSQQLMDDMINNPNETRSD 198


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,734,953
Number of Sequences: 27780
Number of extensions: 260404
Number of successful extensions: 509
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)