Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_J04
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679... 168 3e-42
01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626... 168 3e-42
08_02_1410 - 26876243-26876497,26877129-26877239,26877240-268773... 28 7.4
08_01_0680 - 5958066-5960253,5960707-5961503 28 7.4
03_03_0279 - 16134422-16134608,16134703-16134947,16135046-161353... 27 9.8
02_04_0381 - 22497519-22497769,22498157-22498247 27 9.8
>01_06_1660 +
38966999-38967001,38967685-38967757,38967841-38967923,
38968042-38968168,38968260-38968339,38968428-38968544,
38968711-38968845,38969046-38969215,38969300-38969417
Length = 301
Score = 168 bits (409), Expect = 3e-42
Identities = 82/158 (51%), Positives = 102/158 (64%)
Frame = +1
Query: 178 QDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAA 357
QDKNKYNTPKYR + +NKD+T Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAA
Sbjct: 40 QDKNKYNTPKYRFV---TNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAA 96
Query: 358 YSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPXAFXCYLDVGLARTTTGAR 537
Y TG +Y VEP D F LDVGL RTTTG R
Sbjct: 97 YCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVEPADER-RPFRALLDVGLIRTTTGNR 155
Query: 538 VFGAMKGAVDGGLNVPHSIKRFPGYDAXSKKFNAEVHR 651
VFGA+KGA+DGGL++PHS KRF G+ K+ ++++HR
Sbjct: 156 VFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHR 193
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +2
Query: 65 GFVKVVKNKQYFKRYQVKF 121
GFVK K Y KR+QVKF
Sbjct: 3 GFVKTQKTNAYHKRFQVKF 21
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +3
Query: 72 LKL*RTNNTSRGTK*NSTRRREGKTDYYARKRL 170
+K +TN + + RRR+GKTDY AR RL
Sbjct: 5 VKTQKTNAYHKRFQVKFKRRRQGKTDYRARIRL 37
>01_06_1659 +
38961637-38961639,38962361-38962433,38962531-38962613,
38962732-38962858,38962950-38963029,38963112-38963228,
38963393-38963527,38963714-38963883,38963970-38964087
Length = 301
Score = 168 bits (409), Expect = 3e-42
Identities = 82/158 (51%), Positives = 102/158 (64%)
Frame = +1
Query: 178 QDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAA 357
QDKNKYNTPKYR + +NKD+T Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAA
Sbjct: 40 QDKNKYNTPKYRFV---TNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAA 96
Query: 358 YSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPXAFXCYLDVGLARTTTGAR 537
Y TG +Y VEP D F LDVGL RTTTG R
Sbjct: 97 YCTGLLLARRVLTLRGLDQEYEGNVEATGEDYYVEPADER-RPFRALLDVGLIRTTTGNR 155
Query: 538 VFGAMKGAVDGGLNVPHSIKRFPGYDAXSKKFNAEVHR 651
VFGA+KGA+DGGL++PHS KRF G+ K+ ++++HR
Sbjct: 156 VFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHR 193
Score = 31.5 bits (68), Expect = 0.60
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +2
Query: 65 GFVKVVKNKQYFKRYQVKF 121
GFVK K YFKR+QVKF
Sbjct: 3 GFVKTQKTHAYFKRFQVKF 21
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +3
Query: 126 RRREGKTDYYARKRL 170
RRR+GKTDY AR RL
Sbjct: 23 RRRQGKTDYRARIRL 37
>08_02_1410 -
26876243-26876497,26877129-26877239,26877240-26877324,
26877620-26877672,26878318-26878440,26878514-26878597,
26878708-26878773,26879512-26879584,26879854-26879888,
26879970-26880212
Length = 375
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +1
Query: 190 KYNTPKYRLIVRLSNKDVTCQVAYSRI--EGDHIVCAAYSHEL 312
+YNT +YR + +S K V C+ + + E DH+ A S L
Sbjct: 274 RYNTSRYRELPHISIKCVFCKASVEPMGEESDHVHIIALSDAL 316
>08_01_0680 - 5958066-5960253,5960707-5961503
Length = 994
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +1
Query: 157 LVNASLVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHE 309
L+N SL+Q + KY +V D+ + SR D+ +C AY+ E
Sbjct: 470 LINRSLIQPEET----KYGEVVSCRVHDMMLDLILSRCAEDNFICVAYNLE 516
>03_03_0279 -
16134422-16134608,16134703-16134947,16135046-16135364,
16135451-16135675,16135780-16135946,16136030-16136146,
16136234-16136407,16136489-16136584,16136669-16136885,
16137005-16137123,16137249-16137441,16137562-16137713,
16137809-16137938,16138667-16138776
Length = 816
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -3
Query: 251 WHVTSLLERRTIRRYLGVLY 192
W S LERR RRYL +LY
Sbjct: 775 WKYVSNLERRETRRYLEMLY 794
>02_04_0381 - 22497519-22497769,22498157-22498247
Length = 113
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 321 WCEGWSDKLCCSIFNWSAISTKTASK 398
+C+G+ DK CC +WS K SK
Sbjct: 90 YCDGYDDKSCCD--DWSGDCHKCCSK 113
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,696,484
Number of Sequences: 37544
Number of extensions: 325451
Number of successful extensions: 735
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -