Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_J02
         (400 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa...    28   0.46 
SPAC806.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         25   4.3  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   4.3  
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    24   7.6  
SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomy...    24   7.6  
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr...    24   10.0 
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    24   10.0 
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    24   10.0 
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos...    24   10.0 
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S...    24   10.0 

>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
           Nse6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 522

 Score = 28.3 bits (60), Expect = 0.46
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +2

Query: 230 LPQNSLLANKQIMDISMNIYFTPTRSVTKFSLKKGKRKTVKAVIKR 367
           LP N+   ++   D + N+     +S +   +KKGK+K  +   KR
Sbjct: 477 LPNNNKQKDRYFKDKTSNLSMKENKSFSAKKVKKGKKKNKRQAYKR 522


>SPAC806.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 72

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -3

Query: 191 EKCLTSLVVSVIALC 147
           EKC+T+L+++ I LC
Sbjct: 20  EKCITNLLITTILLC 34


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +2

Query: 239  NSLLANKQIMDISMNIYFTPTRSVTKFSLKKGKRKTVKAVIKRFFRLHW 385
            + L+A +Q +  S+N  F P  S+ + S  K    +V  + + +  L W
Sbjct: 2765 SDLIAWRQSVFKSINKVFLPLVSIAQQSTNKSNTNSVSYLYRGYHELAW 2813


>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 369 NRLITAFTVFLLPFFKLNFVTDLVGVK*MFIEMSII 262
           NRL +  T FL PF + N V     +   F+E S I
Sbjct: 289 NRLKSELTDFLTPFARENRVVTKEDISNFFLERSRI 324


>SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 276

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +2

Query: 248 LANKQIMDISMNIYFTPTRSVTKFSLKKGKRKTVKAVIKRFFRLH 382
           L++ +++D+S+    TP   + ++ L+KG     KA    F  +H
Sbjct: 197 LSDIRLLDLSLKYNKTPANILLRYCLQKGVSPIFKA--SSFVHIH 239


>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 382

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 104 VLLLAMLDVFRLRPYTMQLRLLLK 175
           VLL+ +L V  L  YT   R+LLK
Sbjct: 35  VLLICLLSVILLLRYTRHGRILLK 58


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 154  HCVRAKPEDIEHSEQQYVKKRSI 86
            HC    P +IEH     +KKR I
Sbjct: 1167 HCTTMMPTNIEHDPGCTLKKRHI 1189


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 227 CLPQNSLLANKQIMDI 274
           C+P NSL+AN   +DI
Sbjct: 324 CVPINSLMANSDSVDI 339


>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 99  LTYCCSLCSMSSGFALTQCNYAYY*RCQTFL 191
           +T  C LCS  S  A     Y  Y +C+T L
Sbjct: 286 ITELCKLCSKESLDAFLPAFYDVYFQCRTRL 316


>SPBC336.05c |||S-adenosylmethionine-
           dependentmethyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 378

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 202 NIXIQPRSLLTSKFTSSQQTNYGHFNEHLF 291
           N   +  S LTS  +S   TN+ H  EH+F
Sbjct: 150 NTIFEKLSTLTSSISSRTSTNFRH-PEHVF 178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,535,760
Number of Sequences: 5004
Number of extensions: 26378
Number of successful extensions: 81
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)