Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_J02
         (400 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0561 - 24984960-24985205,24985283-24985354,24985906-249859...    26   9.5  
09_02_0239 + 6154758-6155039                                           26   9.5  
05_01_0275 - 2136047-2136202,2137072-2137263,2137345-2137506           26   9.5  

>11_06_0561 -
           24984960-24985205,24985283-24985354,24985906-24985977,
           24986612-24986782,24987464-24987653,24987733-24987976,
           24988162-24988474,24988687-24989517,24989628-24989672,
           24989677-24989790,24989877-24990371,24990627-24990824,
           24990902-24991357
          Length = 1148

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 369 NRLITAFTVFLLPFFKLNFVTDLVGVK*MFIEMSIICLL 253
           N+L+  F V    FF ++ V +L G    F+E S+I  L
Sbjct: 773 NKLLKEFPVPAYGFFDISGVDELTGKGKGFVESSVIMFL 811


>09_02_0239 + 6154758-6155039
          Length = 93

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 99  LTYCCSLCSMSSGFALTQCNYAYY*RC 179
           ++ C   CS++   A +QC Y+ Y +C
Sbjct: 51  ISACGKACSLAGPQACSQCQYSVYQQC 77


>05_01_0275 - 2136047-2136202,2137072-2137263,2137345-2137506
          Length = 169

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 157 LHCVRAKPEDIEHSEQQYVKKRS 89
           L C    PED++H EQ ++KK +
Sbjct: 145 LLCNLPTPEDLKHYEQGFIKKHA 167


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,167,816
Number of Sequences: 37544
Number of extensions: 144402
Number of successful extensions: 283
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)