Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_J02
         (400 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY119133-1|AAM50993.1|  178|Drosophila melanogaster RE35766p pro...    55   4e-08
AE014297-3081|AAF55944.2|  178|Drosophila melanogaster CG13410-P...    55   4e-08
AF247761-1|AAF74192.1| 1671|Drosophila melanogaster kinesin supe...    28   4.0  
AE013599-2336|AAM70884.1| 1670|Drosophila melanogaster CG8566-PD...    28   4.0  
AY060813-1|AAL28361.1|  317|Drosophila melanogaster GH28342p pro...    27   9.2  
AE013599-910|AAF58909.2|  317|Drosophila melanogaster CG1773-PA ...    27   9.2  

>AY119133-1|AAM50993.1|  178|Drosophila melanogaster RE35766p
           protein.
          Length = 178

 Score = 54.8 bits (126), Expect = 4e-08
 Identities = 35/62 (56%), Positives = 42/62 (67%), Gaps = 7/62 (11%)
 Frame = +2

Query: 224 PCL-PQNSLL--ANKQIMDIS--MNIYFTP--TRSVTKFSLKKGKRKTVKAVIKRFFRLH 382
           PCL P  SL   A+ Q++ +   +    TP  TR+VTKFSL KGKRKTVKAV+KRF RL 
Sbjct: 41  PCLLPTPSLASPAHHQLLQLPGVLAATGTPSNTRNVTKFSLVKGKRKTVKAVLKRFKRLD 100

Query: 383 WG 388
           WG
Sbjct: 101 WG 102


>AE014297-3081|AAF55944.2|  178|Drosophila melanogaster CG13410-PA
           protein.
          Length = 178

 Score = 54.8 bits (126), Expect = 4e-08
 Identities = 35/62 (56%), Positives = 42/62 (67%), Gaps = 7/62 (11%)
 Frame = +2

Query: 224 PCL-PQNSLL--ANKQIMDIS--MNIYFTP--TRSVTKFSLKKGKRKTVKAVIKRFFRLH 382
           PCL P  SL   A+ Q++ +   +    TP  TR+VTKFSL KGKRKTVKAV+KRF RL 
Sbjct: 41  PCLLPTPSLASPAHHQLLQLPGVLAATGTPSNTRNVTKFSLVKGKRKTVKAVLKRFKRLD 100

Query: 383 WG 388
           WG
Sbjct: 101 WG 102


>AF247761-1|AAF74192.1| 1671|Drosophila melanogaster kinesin
            superfamily member DUnc104 protein.
          Length = 1671

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 161  RLLLKMSDISQPLRIXRYNLDPCLPQNSLLANKQIM 268
            R+L     ISQP+R  ++   PC P +++LA   ++
Sbjct: 1083 RMLPPSIPISQPVRSPKFGPLPCAPTSTVLAKHDVL 1118


>AE013599-2336|AAM70884.1| 1670|Drosophila melanogaster CG8566-PD
            protein.
          Length = 1670

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 161  RLLLKMSDISQPLRIXRYNLDPCLPQNSLLANKQIM 268
            R+L     ISQP+R  ++   PC P +++LA   ++
Sbjct: 1082 RMLPPSIPISQPVRSPKFGPLPCAPTSTVLAKHDVL 1117


>AY060813-1|AAL28361.1|  317|Drosophila melanogaster GH28342p
           protein.
          Length = 317

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
 Frame = +2

Query: 80  CKNAAFFNVLLLAMLDVFRLRPYTMQLRLLLKMSDISQPLRIXRYNLDP--CLPQNSLLA 253
           C  +    + +L     F++ P + ++R+ L   DIS       YN      LP      
Sbjct: 90  CGGSLLSELFVLTAAHCFKMCPRSKEIRVWLGELDISSTSDCVTYNYQRVCALPVEEFTI 149

Query: 254 NKQIMDISMNIYFTPTRSVTKFSLKK 331
           +K I+    N+++ P   +    L K
Sbjct: 150 DKWILHEEFNLFY-PGYDIALIKLNK 174


>AE013599-910|AAF58909.2|  317|Drosophila melanogaster CG1773-PA
           protein.
          Length = 317

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
 Frame = +2

Query: 80  CKNAAFFNVLLLAMLDVFRLRPYTMQLRLLLKMSDISQPLRIXRYNLDP--CLPQNSLLA 253
           C  +    + +L     F++ P + ++R+ L   DIS       YN      LP      
Sbjct: 90  CGGSLLSELFVLTAAHCFKMCPRSKEIRVWLGELDISSTSDCVTYNYQRVCALPVEEFTI 149

Query: 254 NKQIMDISMNIYFTPTRSVTKFSLKK 331
           +K I+    N+++ P   +    L K
Sbjct: 150 DKWILHEEFNLFY-PGYDIALIKLNK 174


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,039,841
Number of Sequences: 53049
Number of extensions: 275550
Number of successful extensions: 595
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1149697725
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)