Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_J02
(400 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY204177-1|AAO39181.1| 385|Caenorhabditis elegans nuclear recep... 29 1.6
AL022272-2|CAA18351.1| 385|Caenorhabditis elegans Hypothetical ... 29 1.6
AY204185-1|AAO39189.1| 400|Caenorhabditis elegans nuclear recep... 28 2.8
AL022272-4|CAC42310.2| 391|Caenorhabditis elegans Hypothetical ... 28 2.8
AY204202-1|AAO39203.1| 339|Caenorhabditis elegans nuclear recep... 27 6.5
AY204201-1|AAO39202.1| 409|Caenorhabditis elegans nuclear recep... 27 6.5
AY204200-1|AAO39201.1| 304|Caenorhabditis elegans nuclear recep... 27 6.5
AF408754-1|AAO27833.1| 418|Caenorhabditis elegans nuclear recep... 27 6.5
AC084155-11|AAQ91893.1| 304|Caenorhabditis elegans Nuclear horm... 27 6.5
AC084155-10|AAG23368.3| 418|Caenorhabditis elegans Nuclear horm... 27 6.5
AC024832-7|AAL27257.1| 389|Caenorhabditis elegans Hypothetical ... 27 6.5
AC024832-6|AAL27256.1| 459|Caenorhabditis elegans Hypothetical ... 27 6.5
>AY204177-1|AAO39181.1| 385|Caenorhabditis elegans nuclear receptor
NHR-68 protein.
Length = 385
Score = 28.7 bits (61), Expect = 1.6
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 263 FVCWLEVNFEVSKDLGCIXIFLKAEKCL 180
FVC + N V K + C F + EKCL
Sbjct: 41 FVCQFDQNCPVDKSIRCACRFCRFEKCL 68
>AL022272-2|CAA18351.1| 385|Caenorhabditis elegans Hypothetical
protein H12C20.3 protein.
Length = 385
Score = 28.7 bits (61), Expect = 1.6
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 263 FVCWLEVNFEVSKDLGCIXIFLKAEKCL 180
FVC + N V K + C F + EKCL
Sbjct: 41 FVCQFDQNCPVDKSIRCACRFCRFEKCL 68
>AY204185-1|AAO39189.1| 400|Caenorhabditis elegans nuclear receptor
NHR-101 protein.
Length = 400
Score = 27.9 bits (59), Expect = 2.8
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 263 FVCWLEVNFEVSKDLGCIXIFLKAEKCL 180
FVC E N V K + C F + EKC+
Sbjct: 50 FVCQHEKNCPVDKSIRCACRFCRFEKCI 77
>AL022272-4|CAC42310.2| 391|Caenorhabditis elegans Hypothetical
protein H12C20.6a protein.
Length = 391
Score = 27.9 bits (59), Expect = 2.8
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 263 FVCWLEVNFEVSKDLGCIXIFLKAEKCL 180
FVC E N V K + C F + EKC+
Sbjct: 41 FVCQHEKNCPVDKSIRCACRFCRFEKCI 68
>AY204202-1|AAO39203.1| 339|Caenorhabditis elegans nuclear receptor
NHR-114 protein.
Length = 339
Score = 26.6 bits (56), Expect = 6.5
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -3
Query: 263 FVCWLEVNFEVSKDLGCIXIFLKAEKCLT 177
++C E N V K + C + + EKCL+
Sbjct: 49 YICQFEGNCPVDKTIRCACRYCRFEKCLS 77
>AY204201-1|AAO39202.1| 409|Caenorhabditis elegans nuclear receptor
NHR-114 protein.
Length = 409
Score = 26.6 bits (56), Expect = 6.5
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -3
Query: 263 FVCWLEVNFEVSKDLGCIXIFLKAEKCLT 177
++C E N V K + C + + EKCL+
Sbjct: 40 YICQFEGNCPVDKTIRCACRYCRFEKCLS 68
>AY204200-1|AAO39201.1| 304|Caenorhabditis elegans nuclear receptor
NHR-114 protein.
Length = 304
Score = 26.6 bits (56), Expect = 6.5
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -3
Query: 263 FVCWLEVNFEVSKDLGCIXIFLKAEKCLT 177
++C E N V K + C + + EKCL+
Sbjct: 49 YICQFEGNCPVDKTIRCACRYCRFEKCLS 77
>AF408754-1|AAO27833.1| 418|Caenorhabditis elegans nuclear receptor
protein protein.
Length = 418
Score = 26.6 bits (56), Expect = 6.5
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -3
Query: 263 FVCWLEVNFEVSKDLGCIXIFLKAEKCLT 177
++C E N V K + C + + EKCL+
Sbjct: 49 YICQFEGNCPVDKTIRCACRYCRFEKCLS 77
>AC084155-11|AAQ91893.1| 304|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 114, isoform b protein.
Length = 304
Score = 26.6 bits (56), Expect = 6.5
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -3
Query: 263 FVCWLEVNFEVSKDLGCIXIFLKAEKCLT 177
++C E N V K + C + + EKCL+
Sbjct: 49 YICQFEGNCPVDKTIRCACRYCRFEKCLS 77
>AC084155-10|AAG23368.3| 418|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 114, isoform a protein.
Length = 418
Score = 26.6 bits (56), Expect = 6.5
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -3
Query: 263 FVCWLEVNFEVSKDLGCIXIFLKAEKCLT 177
++C E N V K + C + + EKCL+
Sbjct: 49 YICQFEGNCPVDKTIRCACRYCRFEKCLS 77
>AC024832-7|AAL27257.1| 389|Caenorhabditis elegans Hypothetical
protein Y57E12AL.1b protein.
Length = 389
Score = 26.6 bits (56), Expect = 6.5
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 108 CCSLCSMSSGFALTQCNYAYY*RCQTFLS 194
CCS+C + T+ YA+ TFLS
Sbjct: 26 CCSICPTTKSSTTTRIMYAFLLFTSTFLS 54
>AC024832-6|AAL27256.1| 459|Caenorhabditis elegans Hypothetical
protein Y57E12AL.1a protein.
Length = 459
Score = 26.6 bits (56), Expect = 6.5
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 108 CCSLCSMSSGFALTQCNYAYY*RCQTFLS 194
CCS+C + T+ YA+ TFLS
Sbjct: 26 CCSICPTTKSSTTTRIMYAFLLFTSTFLS 54
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,506,727
Number of Sequences: 27780
Number of extensions: 152188
Number of successful extensions: 411
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -