Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_J02
         (400 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    26   0.14 
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   1.3  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   2.2  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   3.0  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   3.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   5.2  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   6.9  

>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 26.2 bits (55), Expect = 0.14
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 223 SLLTSKFTSSQQTNYGHFNEHLFYPNKI 306
           S L++ +  S   NY ++N+ L+Y N I
Sbjct: 83  SSLSNNYKYSNYNNYNNYNKKLYYKNYI 110


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +1

Query: 235 SKFTSSQQTNYGHFNEHLFYPNKI 306
           + + +    NY ++N+ L+Y N I
Sbjct: 328 NNYNNYNNNNYNNYNKKLYYKNYI 351


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 215 NLDPCLPQNSLLANKQIMDISMNIYFTPTRSVTKFSLKKG 334
           N+D  L  + +L  K+I DI++       + V K   KKG
Sbjct: 95  NIDVTLQNDEVLDWKKIFDINLLGLTCMIQEVLKLMKKKG 134


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 190 SAFKNIXIQPRSLLTSKFTSSQQTNYGHFNEHLFY 294
           ++F    + P+SLL S+   S    +G  +  LFY
Sbjct: 250 ASFGRPKMTPQSLLPSQTGLSPYLRFGCLSTRLFY 284


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 262 NYGHFNEHLFYPNKI 306
           NY ++N+ L+Y N I
Sbjct: 332 NYNNYNKKLYYKNYI 346


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 202 NIXIQPRSLLTSKFTSSQQTNYGHFNEH 285
           NI  +P +++ S   S  Q+N  HF  H
Sbjct: 894 NIGGKPVAVVKSSAQSLLQSNQQHFPHH 921


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 218 LDPCLPQNSLLANKQI 265
           LDP LP+ +L A K I
Sbjct: 596 LDPNLPKLALFATKDI 611


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,404
Number of Sequences: 438
Number of extensions: 1916
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)