Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_J01
         (415 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4MY15 Cluster: Long-chain-fatty-acid--CoA ligase; n=1;...    33   2.3  
UniRef50_UPI000049A468 Cluster: hypothetical protein 258.t00006;...    32   4.0  
UniRef50_Q950Z2 Cluster: Ymf77; n=3; cellular organisms|Rep: Ymf...    31   7.1  
UniRef50_Q30UH2 Cluster: Diguanylate cyclase/phosphodiesterase; ...    31   9.3  
UniRef50_A2Z4F9 Cluster: Putative uncharacterized protein; n=1; ...    31   9.3  

>UniRef50_A4MY15 Cluster: Long-chain-fatty-acid--CoA ligase; n=1;
           Haemophilus influenzae 22.1-21|Rep:
           Long-chain-fatty-acid--CoA ligase - Haemophilus
           influenzae 22.1-21
          Length = 291

 Score = 33.1 bits (72), Expect = 2.3
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = +3

Query: 297 CLPSKFDCRAXXKRKFTHS 353
           CLPSK DCRA   R F+HS
Sbjct: 236 CLPSKMDCRAIYWRSFSHS 254


>UniRef50_UPI000049A468 Cluster: hypothetical protein 258.t00006;
           n=1; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
           protein 258.t00006 - Entamoeba histolytica HM-1:IMSS
          Length = 799

 Score = 32.3 bits (70), Expect = 4.0
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = +1

Query: 277 EFE*NQTVYHPNSIVGXIXNENSLIVNLGLHL*NXKDSLLSRKLNR 414
           E + N T  H N  +  + NE S I NL   L N ++SLL   L R
Sbjct: 146 EIKFNTTKIHKNEFIWFLNNERSFIYNLNEILKNDQESLLLLNLER 191


>UniRef50_Q950Z2 Cluster: Ymf77; n=3; cellular organisms|Rep: Ymf77
           - Tetrahymena thermophila
          Length = 1321

 Score = 31.5 bits (68), Expect = 7.1
 Identities = 19/51 (37%), Positives = 28/51 (54%)
 Frame = -2

Query: 195 ISIHNLXKKYXNVILLMLGI*FRLCQNVIIMYTYIIS*KINNEHIYVICLY 43
           I   N+   + N+IL+ L     L ++ I  Y  II+  I NEHIY+I +Y
Sbjct: 521 IIFKNIIPSHLNIILIKLNNPMLLIKS-IQYYNIIINKLILNEHIYIINIY 570


>UniRef50_Q30UH2 Cluster: Diguanylate cyclase/phosphodiesterase;
           n=1; Thiomicrospira denitrificans ATCC 33889|Rep:
           Diguanylate cyclase/phosphodiesterase - Thiomicrospira
           denitrificans (strain ATCC 33889 / DSM 1351)
          Length = 623

 Score = 31.1 bits (67), Expect = 9.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 64  MFIIYLSRDNVXIHYNNILTQ 126
           MF++Y  RDN+ +HY  I TQ
Sbjct: 94  MFVVYAMRDNIELHYLAIFTQ 114


>UniRef50_A2Z4F9 Cluster: Putative uncharacterized protein; n=1;
           Oryza sativa (indica cultivar-group)|Rep: Putative
           uncharacterized protein - Oryza sativa subsp. indica
           (Rice)
          Length = 581

 Score = 31.1 bits (67), Expect = 9.3
 Identities = 19/65 (29%), Positives = 26/65 (40%)
 Frame = +3

Query: 180 GYVLKLLENYFMFXLENYMXNYMQYKIMSSIK*IRMKPNCLPSKFDCRAXXKRKFTHSEP 359
           GYV  L +N   F  E    N    +++S    +   PN     FDCR   K+     E 
Sbjct: 482 GYVALLGDNLARFLFEKIQANLEVRRVVSENLIVSCVPNAPSHNFDCRLPWKQLMIRRE- 540

Query: 360 RPAFV 374
            P F+
Sbjct: 541 HPCFI 545


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 349,177,206
Number of Sequences: 1657284
Number of extensions: 6000759
Number of successful extensions: 9704
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9703
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 19042509735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)