Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_J01
         (415 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar...    25   3.5  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    25   6.1  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    24   8.1  
SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyc...    24   8.1  

>SPAC23H3.03c |||nitrogen permease regulator
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 292 QTVYHPNSIVGXIXNENSLIVNLGLHL*NXKDS 390
           Q + HP SI+G     N+LI N+ +     +DS
Sbjct: 83  QVIGHPISIIGSNYERNALIFNMCMIFHEEEDS 115


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 13/21 (61%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = +1

Query: 265 APLNEF-E*N-QTVYHPNSIV 321
           +PL  F E N QT+YHPN IV
Sbjct: 553 SPLGTFAERNFQTIYHPNKIV 573


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 175 KKIXKCYFTNVRNII 131
           K I +C+FTNV+ +I
Sbjct: 592 KAIDRCHFTNVKKVI 606


>SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 115 CYYNVYXHYLLKD 77
           C YNVY H+ LK+
Sbjct: 86  CLYNVYAHHALKN 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,579,568
Number of Sequences: 5004
Number of extensions: 29086
Number of successful extensions: 25
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)