Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_I24
(595 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc... 108 5e-25
SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces pombe... 72 6e-14
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce... 50 3e-07
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ... 27 2.7
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 26 3.6
SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces... 26 3.6
SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces po... 26 3.6
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 26 3.6
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 25 6.3
SPAC1F5.08c |yam8|ehs1|calcium transport protein|Schizosaccharom... 25 8.3
>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 364
Score = 108 bits (260), Expect = 5e-25
Identities = 51/152 (33%), Positives = 80/152 (52%)
Frame = +2
Query: 134 VGFNQDQGCFACGTENGFRVFNSDPVQEKERQNFAVGGLSYVEMLFRCNYMALVGGGKTP 313
V NQD C + + G+++F +P++ + ++ F GGLS V+MLFR N + LVGGG P
Sbjct: 7 VSLNQDASCMSVALDTGYKIFQINPLKLRAQRQFNDGGLSIVKMLFRSNVLLLVGGGGNP 66
Query: 314 VYPPNKVIIWDDLXKDSAISLDFNSPVKAVKLRRDRIVVVLEQLIKVYTFTAQPQLLHVF 493
Y PNK+I+WDD+ + L+ N +K + + + + +Y F +L
Sbjct: 67 KYAPNKLIVWDDVKERPVKELELNFEIKGICFDGKLLAIATASKLFLYQFGNNLKLQRCL 126
Query: 494 ETCQNTKXLCVXCPNSNNALLAYPSRKTGHVQ 589
+T QN K LC + +PSRK G +Q
Sbjct: 127 DT-QNPKGLCAMVTTVEKTAIVFPSRKVGQLQ 157
>SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 373
Score = 72.1 bits (169), Expect = 6e-14
Identities = 49/136 (36%), Positives = 70/136 (51%), Gaps = 1/136 (0%)
Frame = +2
Query: 170 GTENGFRVFNSDPVQEKERQNFAVGGLSYVEMLFRCNYMALVGGGKTPVYPPNKVIIWDD 349
GT +G++++N DP + + G S VEMLF + +ALV N+ + +
Sbjct: 18 GTFDGYKIYNCDPFGKCFHK--IQGATSIVEMLFSTSLVALVEKDDGN----NRKLKLIN 71
Query: 350 LXKDSAI-SLDFNSPVKAVKLRRDRIVVVLEQLIKVYTFTAQPQLLHVFETCQNTKXLCV 526
K + I L F +P+ AVKL R R++ VLE+ I VY + LLH ET N +C
Sbjct: 72 TKKSTTICELTFPTPLLAVKLNRKRLLAVLEEQIYVYDISNM-LLLHTIETTSNVFAVCA 130
Query: 527 XCPNSNNALLAYPSRK 574
PNS N LAYP +
Sbjct: 131 LSPNSENCYLAYPDSR 146
>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 50.0 bits (114), Expect = 3e-07
Identities = 33/113 (29%), Positives = 63/113 (55%), Gaps = 2/113 (1%)
Frame = +2
Query: 125 LLYVGFNQDQGCFACGTENGFRVFNSDPVQEKERQNFAVGGLSYVEMLFRCNYMALVGGG 304
+LY +NQD+G + G+ENG++V+ S+P + G S EML+ + +A V
Sbjct: 5 ILYCSWNQDRGFLSIGSENGYQVYRSNPFTLCFSKK--ANGASICEMLYESSLLAFVN-- 60
Query: 305 KTPVYPPN-KVIIWDDLXKDSAI-SLDFNSPVKAVKLRRDRIVVVLEQLIKVY 457
+ P + +++ D+ +D + + + SPV +V+ +R+VV+++ I VY
Sbjct: 61 ---ISPESTRLLKLVDIKRDIVLCRIFYPSPVLSVRFTWNRLVVLIKGSIYVY 110
>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
Its3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 742
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = -1
Query: 508 VLTSFKHMEQLGLSRKSIHFYQLF*NNNNTVSPQFHSFHR 389
++ + H E L +Y+ NN NT+ QF+ HR
Sbjct: 377 IIKTIHHSEHKFLREILYDYYEHVKNNPNTLISQFYGLHR 416
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 289 FGGRW*NTGLSSEQSYY 339
FGG+W N GLS+ S Y
Sbjct: 351 FGGKWTNNGLSAVSSAY 367
>SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 333
Score = 26.2 bits (55), Expect = 3.6
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Frame = +3
Query: 99 LKXIHLVTGFCTWA-LTKIKVVSLVERKMVSVSSIVTPYKRKNGRTLLLAVFRTWKCYSG 275
L I L + TW K+ V+SL + V V+++ + K + + ++ + + +
Sbjct: 122 LALIFLTYFYETWTKAVKVTVISLAQ--CVKVTAV---FLAKCVKVTAVGLYNSREKWV- 175
Query: 276 VIIWLWWEVVKHRSILRTK 332
VIIWL W V+ + LR K
Sbjct: 176 VIIWLLWVVICYTLFLRAK 194
>SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 458
Score = 26.2 bits (55), Expect = 3.6
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +2
Query: 188 RVFNSDPVQEKERQNFAVGGLSYVEMLFRCNYMALVGGGKTPV 316
R F PV +R FA+ G SY F C +G +PV
Sbjct: 408 RSFRFTPVNTGKRHYFALDGESYPLEPFECRVAPKLGTTLSPV 450
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 177 KMVSVSSIVTPYKRKNGRTLLLAVFRTWKCYSGVII 284
K +++ + K K+ R LLLA+F+ W S I+
Sbjct: 309 KALNIKVLPRDIKSKDPRNLLLAIFQQWLPLSTAIL 344
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +3
Query: 237 LLAVFRTWKCYSGVIIWLWWEVVKHRSIL 323
LL V+ +K G W W + HR+++
Sbjct: 564 LLNVYHAYKSGEGTADWCWNHFLSHRALI 592
>SPAC1F5.08c |yam8|ehs1|calcium transport
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 486
Score = 25.0 bits (52), Expect = 8.3
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +1
Query: 547 CSSCLSQPKNWSCA 588
CS C + KNW CA
Sbjct: 354 CSDCANSYKNWLCA 367
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,500,456
Number of Sequences: 5004
Number of extensions: 51246
Number of successful extensions: 159
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -