Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_I24
(595 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0476 + 3505799-3506479,3506639-3506897,3508427-3508550,350... 163 7e-41
01_07_0081 - 40959279-40959375,40959463-40959589,40960138-409603... 159 2e-39
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 108 3e-24
02_05_1034 - 33649634-33649651,33649699-33649811,33649938-336500... 98 4e-21
05_03_0315 + 12222085-12222144,12222319-12222723 31 0.69
06_01_0858 + 6503701-6504069,6505114-6505231,6505485-6505531 28 4.9
03_04_0153 + 17745473-17745889,17746120-17746272,17747307-177475... 28 4.9
01_01_1149 - 9134390-9134600,9134732-9134790,9135650-9135724,913... 28 6.5
12_01_0737 - 6588612-6588922,6595261-6596602,6596639-6596749 27 8.5
>01_01_0476 +
3505799-3506479,3506639-3506897,3508427-3508550,
3508922-3509030
Length = 390
Score = 163 bits (397), Expect = 7e-41
Identities = 83/155 (53%), Positives = 99/155 (63%)
Frame = +2
Query: 125 LLYVGFNQDQGCFACGTENGFRVFNSDPVQEKERQNFAVGGLSYVEMLFRCNYMALVGGG 304
LL V +NQD GCFA GT NGFR+FN DP +E R++ GG VEMLFRCN +ALVGGG
Sbjct: 20 LLSVSWNQDFGCFAAGTSNGFRIFNCDPFKETFRRDLKSGGFGIVEMLFRCNILALVGGG 79
Query: 305 KTPVYPPNKVIIWDDLXKDSAISLDFNSPVKAVKLRRDRIVVVLEQLIKVYTFTAQPQLL 484
YPPNKV+IWDD F S V+AVKL +D IV+VLE+ I VY FT +LL
Sbjct: 80 SNAHYPPNKVMIWDDHRSHCIGEFAFRSDVRAVKLGKDYIVIVLERKIYVYNFT-DLKLL 138
Query: 485 HVFETCQNTKXLCVXCPNSNNALLAYPSRKTGHVQ 589
H ET N K LC +SN ++LA P GHV+
Sbjct: 139 HQIETQSNPKGLCCLSHHSNTSVLACPGVHQGHVR 173
>01_07_0081 -
40959279-40959375,40959463-40959589,40960138-40960339,
40962414-40963361
Length = 457
Score = 159 bits (386), Expect = 2e-39
Identities = 81/171 (47%), Positives = 103/171 (60%), Gaps = 10/171 (5%)
Frame = +2
Query: 107 NPFGNGLLYVGFNQDQGCFACGTENGFRVFNSDPVQEKERQNFAV----------GGLSY 256
+P LL++ FNQD GCFA GT++GFR++N DP +E R++ GG+
Sbjct: 93 HPAAKDLLHISFNQDYGCFAAGTKSGFRIYNCDPFREIFRRDLGAAGDNGVGGGGGGIGV 152
Query: 257 VEMLFRCNYMALVGGGKTPVYPPNKVIIWDDLXKDSAISLDFNSPVKAVKLRRDRIVVVL 436
VEMLFRCN +ALVGGG P YPPNKV+IWDD L F SPV+ V+LRRDRI+VVL
Sbjct: 153 VEMLFRCNILALVGGGDAPHYPPNKVMIWDDHQSRCIGELSFRSPVRGVRLRRDRIIVVL 212
Query: 437 EQLIKVYTFTAQPQLLHVFETCQNTKXLCVXCPNSNNALLAYPSRKTGHVQ 589
E I VY F A +L+H ET N K LC + +L P + G V+
Sbjct: 213 ENKIFVYNF-ADLKLVHQIETAPNPKGLCAVSQQPGSIVLVCPGAQKGQVR 262
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 108 bits (260), Expect = 3e-24
Identities = 59/158 (37%), Positives = 80/158 (50%), Gaps = 1/158 (0%)
Frame = +2
Query: 116 GNGLLYVGFNQDQGCFACGTENGFRVFNSDPVQEKERQNFAV-GGLSYVEMLFRCNYMAL 292
G LL V +NQD CF T NGFRVF+ P E R+ F GG+ EMLFR + L
Sbjct: 212 GVELLSVSWNQDNSCFIAATTNGFRVFSCKPFHETMRRMFGPNGGIGIAEMLFRTSIFGL 271
Query: 293 VGGGKTPVYPPNKVIIWDDLXKDSAISLDFNSPVKAVKLRRDRIVVVLEQLIKVYTFTAQ 472
G +PP + +WDD + +F S ++AV+L +D VVVLE+ I VY F
Sbjct: 272 AGAESNTEFPPTMLQLWDDYNERRIHKYNFTSEIRAVRLSKDYFVVVLEKTINVYRF-KD 330
Query: 473 PQLLHVFETCQNTKXLCVXCPNSNNALLAYPSRKTGHV 586
+L + T N LC ++N ++ A P G V
Sbjct: 331 LRLFYQARTVSNPNGLCCLSHHANASVFACPGTSKGQV 368
>02_05_1034 -
33649634-33649651,33649699-33649811,33649938-33650029,
33650212-33650321,33650444-33650517,33650877-33650950,
33651091-33651158
Length = 182
Score = 98.3 bits (234), Expect = 4e-21
Identities = 54/143 (37%), Positives = 81/143 (56%)
Frame = +2
Query: 140 FNQDQGCFACGTENGFRVFNSDPVQEKERQNFAVGGLSYVEMLFRCNYMALVGGGKTPVY 319
FNQD F GT++GFR+F++ + ++N +GG+ +EM FR N +A+VG G+ PV
Sbjct: 18 FNQDNSLFYVGTKDGFRIFDAHTGKLHYQKN--IGGIGNMEMYFRTNILAIVGTGEQPVL 75
Query: 320 PPNKVIIWDDLXKDSAISLDFNSPVKAVKLRRDRIVVVLEQLIKVYTFTAQPQLLHVFET 499
P + + D + + L+F + V AV+L R R+VVVL+ +Y + +L ET
Sbjct: 76 SPRCLRLIDTVAAVTKKDLNFKTSVLAVRLSRTRLVVVLQDRTFIYDVNS-TTILEEIET 134
Query: 500 CQNTKXLCVXCPNSNNALLAYPS 568
NTK LC PNS LA P+
Sbjct: 135 VPNTKGLCAFAPNSEACYLAIPA 157
>05_03_0315 + 12222085-12222144,12222319-12222723
Length = 154
Score = 31.1 bits (67), Expect = 0.69
Identities = 12/41 (29%), Positives = 26/41 (63%)
Frame = +2
Query: 320 PPNKVIIWDDLXKDSAISLDFNSPVKAVKLRRDRIVVVLEQ 442
P N ++ DDL +D L++ V++V+LR+ ++ +L++
Sbjct: 47 PDNSIVTLDDLSEDQRRELEWELKVESVELRKQKLARLLKK 87
>06_01_0858 + 6503701-6504069,6505114-6505231,6505485-6505531
Length = 177
Score = 28.3 bits (60), Expect = 4.9
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 382 QQPCESCEIAERPYCCCSRT 441
QQ +C AE CCCSR+
Sbjct: 132 QQAAANCHAAEHAACCCSRS 151
>03_04_0153 +
17745473-17745889,17746120-17746272,17747307-17747512,
17747752-17747959
Length = 327
Score = 28.3 bits (60), Expect = 4.9
Identities = 20/54 (37%), Positives = 25/54 (46%)
Frame = +3
Query: 132 TWALTKIKVVSLVERKMVSVSSIVTPYKRKNGRTLLLAVFRTWKCYSGVIIWLW 293
TW+ KIK +RKMV+ SS V P G L W + VI+ LW
Sbjct: 263 TWS-DKIKEQEDKKRKMVAASSQVEPSPNIFGDLSFLRPPTEWTRSAWVIVTLW 315
>01_01_1149 -
9134390-9134600,9134732-9134790,9135650-9135724,
9135815-9135934,9136012-9136183,9136277-9136335,
9136516-9136572,9136900-9136998,9137088-9137114,
9137607-9137649,9137779-9138023
Length = 388
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 138 ALTKIKVVSLVERKMVSVSSIVTPYKRKNGRTLLLAVFRTW 260
ALT + ++S++ + V I+T YK K+ L LA TW
Sbjct: 40 ALT-LGLLSVISWGVAEVPQIITNYKHKSTEGLSLAFLMTW 79
>12_01_0737 - 6588612-6588922,6595261-6596602,6596639-6596749
Length = 587
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +3
Query: 120 TGFCT-WALTKIKVVSLVERKMVSVSSIVTPYKRKNGRTLLLAVFRTWKCYSGV 278
TG C W + V K+ VTP++ + L L+ RTW C + V
Sbjct: 328 TGLCKEWWGEAVLTACYVLNKIPMKHKKVTPFEEWERKKLNLSYLRTWGCLAKV 381
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,116,367
Number of Sequences: 37544
Number of extensions: 332699
Number of successful extensions: 728
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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