Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_I24
         (595 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016448-16|AAM45377.1|  394|Caenorhabditis elegans Atg (autopha...    64   9e-11
AF016448-15|AAB65961.1|  412|Caenorhabditis elegans Atg (autopha...    64   9e-11
AL031633-25|CAI06057.1|  354|Caenorhabditis elegans Hypothetical...    38   0.004
AL031633-2|CAD60426.1|  388|Caenorhabditis elegans Hypothetical ...    38   0.004
AL031633-1|CAA21019.3|  386|Caenorhabditis elegans Hypothetical ...    38   0.004
AF067948-7|AAC17699.1|  643|Caenorhabditis elegans Hypothetical ...    29   1.9  
U61948-3|AAB03145.1|  335|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AF040653-8|AAB95031.1|  532|Caenorhabditis elegans F-box b prote...    28   4.4  

>AF016448-16|AAM45377.1|  394|Caenorhabditis elegans Atg (autophagy)
           related protein18, isoform b protein.
          Length = 394

 Score = 63.7 bits (148), Expect = 9e-11
 Identities = 50/172 (29%), Positives = 77/172 (44%), Gaps = 9/172 (5%)
 Frame = +2

Query: 98  SEXNPFGNGLLYVGFNQDQGCFACGTENGFRVFNSDPVQEK-----ERQNFAVGGLS--- 253
           SE NP  + + Y+GFNQD      G ++G+  + +  + E      E +N    GL+   
Sbjct: 6   SEENP--DSINYIGFNQDSKVICVGHKDGYMFYKTADILENNTLTYEGENLTHLGLNNCL 63

Query: 254 YVEMLFRCNYMALVGGGKTPVYPPNKVIIWDDLXKDSAISLDFNSPVKAVKLRRDRIVVV 433
            +E LF    M ++         P  + ++    ++      FN  V  V+L RDRIVV 
Sbjct: 64  IIERLFSSALMVVISQKD-----PRVLHVYHFTSRNIICDHRFNKSVLTVRLNRDRIVVC 118

Query: 434 LEQLIKVYTFTAQPQLLHVFETCQNTKXLCVXCPNSNNALLAYP-SRKTGHV 586
           LE  I +Y       + ++ +T  N   +     N  NAL+AYP S  TG V
Sbjct: 119 LEDCIYIYNLKDMKMMHNIMDTPTNKLGVLDLTSNPGNALIAYPGSTDTGSV 170


>AF016448-15|AAB65961.1|  412|Caenorhabditis elegans Atg (autophagy)
           related protein18, isoform a protein.
          Length = 412

 Score = 63.7 bits (148), Expect = 9e-11
 Identities = 50/172 (29%), Positives = 77/172 (44%), Gaps = 9/172 (5%)
 Frame = +2

Query: 98  SEXNPFGNGLLYVGFNQDQGCFACGTENGFRVFNSDPVQEK-----ERQNFAVGGLS--- 253
           SE NP  + + Y+GFNQD      G ++G+  + +  + E      E +N    GL+   
Sbjct: 6   SEENP--DSINYIGFNQDSKVICVGHKDGYMFYKTADILENNTLTYEGENLTHLGLNNCL 63

Query: 254 YVEMLFRCNYMALVGGGKTPVYPPNKVIIWDDLXKDSAISLDFNSPVKAVKLRRDRIVVV 433
            +E LF    M ++         P  + ++    ++      FN  V  V+L RDRIVV 
Sbjct: 64  IIERLFSSALMVVISQKD-----PRVLHVYHFTSRNIICDHRFNKSVLTVRLNRDRIVVC 118

Query: 434 LEQLIKVYTFTAQPQLLHVFETCQNTKXLCVXCPNSNNALLAYP-SRKTGHV 586
           LE  I +Y       + ++ +T  N   +     N  NAL+AYP S  TG V
Sbjct: 119 LEDCIYIYNLKDMKMMHNIMDTPTNKLGVLDLTSNPGNALIAYPGSTDTGSV 170


>AL031633-25|CAI06057.1|  354|Caenorhabditis elegans Hypothetical
           protein Y39A1A.1c protein.
          Length = 354

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 34/157 (21%), Positives = 71/157 (45%), Gaps = 10/157 (6%)
 Frame = +2

Query: 149 DQGCFACGTENGFRVFNSDPVQEKERQNFA--VGGLSYVEM---LFRCNYMALVGGGKTP 313
           D   FA   ++GF+++  +P+  +  +++   VG +  V+      R  Y++ + GG+  
Sbjct: 12  DHSAFAIADKDGFKMYQLNPLHFRMYKDYVIKVGPVRLVKQDGNSRRIIYVSALAGGR-- 69

Query: 314 VYPPNKVIIWDDLXKDSAISLDFNS---PVKAVKLRRDRIVVVLEQLIKVYTFTAQPQLL 484
            +  N ++I+D    +    +   S   P+  + +  +R+V +    + V+T+    + +
Sbjct: 70  -FAQNNLMIFDVARNEEYFEITTPSRYGPITNIHVSPNRLVALNPNRMFVWTYPDDIKQI 128

Query: 485 HVFETCQNTKXLCVXC--PNSNNALLAYPSRKTGHVQ 589
              +   N K +      P +    LAYP  KTG VQ
Sbjct: 129 RSEDIRSNPKGISAMSYDPTTAACYLAYPGFKTGSVQ 165


>AL031633-2|CAD60426.1|  388|Caenorhabditis elegans Hypothetical
           protein Y39A1A.1b protein.
          Length = 388

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 34/157 (21%), Positives = 71/157 (45%), Gaps = 10/157 (6%)
 Frame = +2

Query: 149 DQGCFACGTENGFRVFNSDPVQEKERQNFA--VGGLSYVEM---LFRCNYMALVGGGKTP 313
           D   FA   ++GF+++  +P+  +  +++   VG +  V+      R  Y++ + GG+  
Sbjct: 44  DHSAFAIADKDGFKMYQLNPLHFRMYKDYVIKVGPVRLVKQDGNSRRIIYVSALAGGR-- 101

Query: 314 VYPPNKVIIWDDLXKDSAISLDFNS---PVKAVKLRRDRIVVVLEQLIKVYTFTAQPQLL 484
            +  N ++I+D    +    +   S   P+  + +  +R+V +    + V+T+    + +
Sbjct: 102 -FAQNNLMIFDVARNEEYFEITTPSRYGPITNIHVSPNRLVALNPNRMFVWTYPDDIKQI 160

Query: 485 HVFETCQNTKXLCVXC--PNSNNALLAYPSRKTGHVQ 589
              +   N K +      P +    LAYP  KTG VQ
Sbjct: 161 RSEDIRSNPKGISAMSYDPTTAACYLAYPGFKTGSVQ 197


>AL031633-1|CAA21019.3|  386|Caenorhabditis elegans Hypothetical
           protein Y39A1A.1a protein.
          Length = 386

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 34/157 (21%), Positives = 71/157 (45%), Gaps = 10/157 (6%)
 Frame = +2

Query: 149 DQGCFACGTENGFRVFNSDPVQEKERQNFA--VGGLSYVEM---LFRCNYMALVGGGKTP 313
           D   FA   ++GF+++  +P+  +  +++   VG +  V+      R  Y++ + GG+  
Sbjct: 44  DHSAFAIADKDGFKMYQLNPLHFRMYKDYVIKVGPVRLVKQDGNSRRIIYVSALAGGR-- 101

Query: 314 VYPPNKVIIWDDLXKDSAISLDFNS---PVKAVKLRRDRIVVVLEQLIKVYTFTAQPQLL 484
            +  N ++I+D    +    +   S   P+  + +  +R+V +    + V+T+    + +
Sbjct: 102 -FAQNNLMIFDVARNEEYFEITTPSRYGPITNIHVSPNRLVALNPNRMFVWTYPDDIKQI 160

Query: 485 HVFETCQNTKXLCVXC--PNSNNALLAYPSRKTGHVQ 589
              +   N K +      P +    LAYP  KTG VQ
Sbjct: 161 RSEDIRSNPKGISAMSYDPTTAACYLAYPGFKTGSVQ 197


>AF067948-7|AAC17699.1|  643|Caenorhabditis elegans Hypothetical
           protein T27C4.2 protein.
          Length = 643

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 11/30 (36%), Positives = 22/30 (73%)
 Frame = +2

Query: 410 RRDRIVVVLEQLIKVYTFTAQPQLLHVFET 499
           +R +IVV+++ ++K   F+A+P + HV +T
Sbjct: 463 QRSKIVVMIQTVLKSSVFSAEPFIFHVNQT 492


>U61948-3|AAB03145.1|  335|Caenorhabditis elegans Hypothetical
           protein C46A5.5 protein.
          Length = 335

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 19/58 (32%), Positives = 30/58 (51%)
 Frame = +2

Query: 260 EMLFRCNYMALVGGGKTPVYPPNKVIIWDDLXKDSAISLDFNSPVKAVKLRRDRIVVV 433
           + L RC    LVG  KT     N + +W+DL   S   L+F S  K+++  + +I +V
Sbjct: 138 QALLRC--FRLVGNAKTKNGKRN-ISVWEDLHLSSCEFLNFISDTKSLEKSKFQIFLV 192


>AF040653-8|AAB95031.1|  532|Caenorhabditis elegans F-box b protein
           protein 50 protein.
          Length = 532

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
 Frame = +2

Query: 35  LIXCPIKFTILSP---ELVXKMNLSEXNPFGNGLLYV-GFNQDQG-CFACGTENG 184
           +I C I+F++LS    +L+ ++ + E   F  G+ Y+   + + G  FAC  ENG
Sbjct: 1   MIFCRIQFSMLSKKNKDLIRELRIVESCSFKFGMKYLYHIHSNNGRYFACSLENG 55


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,006,843
Number of Sequences: 27780
Number of extensions: 296535
Number of successful extensions: 696
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)