Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_I23
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    27   3.1  
SPAC17G6.09 |sec62||ER protein translocation subcomplex subunit ...    25   7.2  
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    25   9.5  
SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid protease|Schi...    25   9.5  

>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/43 (23%), Positives = 22/43 (51%)
 Frame = +3

Query: 525 CIKLEYNRVYLPIYVVMTPIWMLLPVLCIEXFMHLIKHSSGSS 653
           C+  +YN      Y+   P+++  P++    FM  +K+ + S+
Sbjct: 290 CLDEDYNLKNFLTYIFYAPLYLAGPIISFNNFMSQMKYPTVST 332


>SPAC17G6.09 |sec62||ER protein translocation subcomplex subunit
           Sec62 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 273

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
 Frame = +3

Query: 372 MWVYDX----ILLIYVLFHMVSHCRNGIERFTGTINKNVWYIAAIGLKMAAQIIICIKLE 539
           +W+Y+     ++ + VLF +V         +   + K  WY++  GL +     + + L 
Sbjct: 123 VWLYEPLPKRVMALAVLFALVVLALVLFPLWPMFMRKGAWYLSMGGLGVIGLFFVLVILR 182

Query: 540 YNRVYLPIYVVMTPIWMLLPVLCIEXFMHLIK 635
           +    +   +V   IW+   +L    F    K
Sbjct: 183 FFLFCITAVIVRPGIWLFPNLLADVGFCDSFK 214


>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +3

Query: 561 IYVVMTPIWMLLPVLCIEXFMHLIKHSS 644
           ++++ +PI + LP + +  F+HL   SS
Sbjct: 143 LFIIFSPIIITLPFIALISFLHLRSLSS 170


>SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid
           protease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 298

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 552 YLPIYVVMTPIWMLLPVLCIEXFMH 626
           +L  Y VM PI++ +P + +  F H
Sbjct: 105 FLQKYAVMNPIFINMPSMIVSAFSH 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,569,521
Number of Sequences: 5004
Number of extensions: 50862
Number of successful extensions: 108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)