Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_I23
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0111 - 11958372-11958713,11959367-11959633,11959729-119601...    29   2.4  
02_02_0620 + 12210812-12210997,12212397-12212474,12212744-122128...    29   4.3  

>06_02_0111 -
           11958372-11958713,11959367-11959633,11959729-11960124,
           11961246-11961320
          Length = 359

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/74 (18%), Positives = 36/74 (48%)
 Frame = +3

Query: 354 FIVFIPMWVYDXILLIYVLFHMVSHCRNGIERFTGTINKNVWYIAAIGLKMAAQIIICIK 533
           F +F+ +   + +L   ++F ++  C +       +++  VW + ++ L   A   +  K
Sbjct: 196 FTLFLSLRARELVLGGRLIFSLIGRCSSN----PASVSTQVWKVVSVALNDMASRGVISK 251

Query: 534 LEYNRVYLPIYVVM 575
            +++  ++PIY  M
Sbjct: 252 EKFDTFHIPIYAPM 265


>02_02_0620 +
           12210812-12210997,12212397-12212474,12212744-12212848,
           12212998-12213022,12213214-12213266,12213523-12213635,
           12213777-12213801,12214560-12214601,12214666-12214726,
           12216027-12216043,12217143-12217257,12217431-12218659
          Length = 682

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 21/73 (28%), Positives = 29/73 (39%)
 Frame = +2

Query: 200 TSXKSCVIDWDWKI*IFNNGYST*GPFYLVYIFDFSYFAMSXIXVXNTLELVHRFYSNVG 379
           TS    V    W I  + NG S     YL +           + V  + EL+ +   +V 
Sbjct: 346 TSIPFSVAGHSWTIRFYPNGDSAESQDYLSFYLILDSANSYDVKVIFSFELLGKNGRSVS 405

Query: 380 VRXYFIDLRTFSY 418
              +  DLRTFSY
Sbjct: 406 SYSFTTDLRTFSY 418


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,842,766
Number of Sequences: 37544
Number of extensions: 262818
Number of successful extensions: 415
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)