Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_I23
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY825249-1|AAX24101.1|  728|Caenorhabditis elegans sodium-couple...    32   0.31 
AL117204-39|CAB55145.4|  422|Caenorhabditis elegans Hypothetical...    32   0.31 
AL110485-24|CAB60372.4|  728|Caenorhabditis elegans Hypothetical...    32   0.31 
AC006644-5|AAF39834.1|  786|Caenorhabditis elegans Hypothetical ...    28   5.0  

>AY825249-1|AAX24101.1|  728|Caenorhabditis elegans sodium-coupled
           neutral amino acidtransporter protein.
          Length = 728

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
 Frame = +3

Query: 360 VFIPMWVYDXILLIYVLFHMVSHCRNGIERFTGTINKNVWYIAAIGLKMAAQI-IICIKL 536
           + + M++Y    +   +  +V H RN   +FTG I  + WY  A  + ++  I +I + L
Sbjct: 543 LLVMMYIYGFRNVRDDITEVVGHARN---KFTGAIGAHSWYFTANWMVISPSIALILVGL 599

Query: 537 EYNRVY-----LPIYVVMTPI--WML--LPVLCIEXFMHL 629
            + R Y       IY  +  I  W L  LPV+ +  FM L
Sbjct: 600 SFVREYPYMGRHDIYPAVFDIFGWFLSFLPVIIVPIFMLL 639


>AL117204-39|CAB55145.4|  422|Caenorhabditis elegans Hypothetical
           protein Y116A8C.9 protein.
          Length = 422

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 345 WNWFIVFIPMWVYDXILLIYVLFHMV 422
           W W +VFIP+WV   +  + VL+ +V
Sbjct: 176 WTWAVVFIPLWVVLSLAAVGVLYALV 201


>AL110485-24|CAB60372.4|  728|Caenorhabditis elegans Hypothetical
           protein Y46G5A.30 protein.
          Length = 728

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
 Frame = +3

Query: 360 VFIPMWVYDXILLIYVLFHMVSHCRNGIERFTGTINKNVWYIAAIGLKMAAQI-IICIKL 536
           + + M++Y    +   +  +V H RN   +FTG I  + WY  A  + ++  I +I + L
Sbjct: 543 LLVMMYIYGFRNVRDDITEVVGHARN---KFTGAIGAHSWYFTANWMVISPSIALILVGL 599

Query: 537 EYNRVY-----LPIYVVMTPI--WML--LPVLCIEXFMHL 629
            + R Y       IY  +  I  W L  LPV+ +  FM L
Sbjct: 600 SFVREYPYMGRHDIYPAVFDIFGWFLSFLPVIIVPIFMLL 639


>AC006644-5|AAF39834.1|  786|Caenorhabditis elegans Hypothetical
           protein F55A3.2 protein.
          Length = 786

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -3

Query: 426 VIPYEKVRRSIKXYRTP 376
           ++P+EK+R+  K YRTP
Sbjct: 674 IVPHEKIRKKQKRYRTP 690


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,053,724
Number of Sequences: 27780
Number of extensions: 279166
Number of successful extensions: 597
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)