Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_I23
(653 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.84
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.84
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.84
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.84
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.84
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.84
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 25 0.84
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 25 0.84
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 23 2.6
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 23 2.6
DQ869053-1|ABJ09600.1| 459|Apis mellifera capa-like receptor pr... 22 4.5
AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive... 21 7.9
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 24.6 bits (51), Expect = 0.84
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +2
Query: 512 TNNNLYKIGI*--QSLFTYLCGNDPYMDAT 595
TN Y IG+ ++ TY C +PY+D T
Sbjct: 156 TNGEWYLIGMPGKKNTITYQCCPEPYVDVT 185
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 24.6 bits (51), Expect = 0.84
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +2
Query: 512 TNNNLYKIGI*--QSLFTYLCGNDPYMDAT 595
TN Y IG+ ++ TY C +PY+D T
Sbjct: 156 TNGEWYLIGMPGKKNTITYQCCPEPYVDVT 185
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 24.6 bits (51), Expect = 0.84
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +2
Query: 512 TNNNLYKIGI*--QSLFTYLCGNDPYMDAT 595
TN Y IG+ ++ TY C +PY+D T
Sbjct: 156 TNGEWYLIGMPGKKNTITYQCCPEPYVDVT 185
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 24.6 bits (51), Expect = 0.84
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +2
Query: 512 TNNNLYKIGI*--QSLFTYLCGNDPYMDAT 595
TN Y IG+ ++ TY C +PY+D T
Sbjct: 156 TNGEWYLIGMPGKKNTITYQCCPEPYVDVT 185
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 24.6 bits (51), Expect = 0.84
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +2
Query: 512 TNNNLYKIGI*--QSLFTYLCGNDPYMDAT 595
TN Y IG+ ++ TY C +PY+D T
Sbjct: 156 TNGEWYLIGMPGKKNTITYQCCPEPYVDVT 185
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 24.6 bits (51), Expect = 0.84
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +2
Query: 512 TNNNLYKIGI*--QSLFTYLCGNDPYMDAT 595
TN Y IG+ ++ TY C +PY+D T
Sbjct: 156 TNGEWYLIGMPGKKNTITYQCCPEPYVDVT 185
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 24.6 bits (51), Expect = 0.84
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +2
Query: 512 TNNNLYKIGI*--QSLFTYLCGNDPYMDAT 595
TN Y IG+ ++ TY C +PY+D T
Sbjct: 224 TNGEWYLIGMPGKKNTITYQCCPEPYVDVT 253
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 24.6 bits (51), Expect = 0.84
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +2
Query: 512 TNNNLYKIGI*--QSLFTYLCGNDPYMDAT 595
TN Y IG+ ++ TY C +PY+D T
Sbjct: 224 TNGEWYLIGMPGKKNTITYQCCPEPYVDVT 253
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 23.0 bits (47), Expect = 2.6
Identities = 10/44 (22%), Positives = 22/44 (50%)
Frame = -2
Query: 190 CTXLINLEICHRFVKLLLREICWHEAXIHFLSESIDNTNSYYIL 59
CT ++ + FVK L+R + W + ++ S+ +++L
Sbjct: 146 CTAVLRC-VVPSFVKDLVRVVSWLQEPSFYIYPSLQGDGKFHLL 188
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 23.0 bits (47), Expect = 2.6
Identities = 10/44 (22%), Positives = 22/44 (50%)
Frame = -2
Query: 190 CTXLINLEICHRFVKLLLREICWHEAXIHFLSESIDNTNSYYIL 59
CT ++ + FVK L+R + W + ++ S+ +++L
Sbjct: 146 CTAVLRC-VVPSFVKDLVRVVSWLQEPSFYIYPSLQGDGKFHLL 188
>DQ869053-1|ABJ09600.1| 459|Apis mellifera capa-like receptor
protein.
Length = 459
Score = 22.2 bits (45), Expect = 4.5
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = +3
Query: 522 ICIKLEYNRVYLPIYVVMTPIWMLLPVLCI 611
IC L+ N P+Y + ++ L+P++ I
Sbjct: 192 ICAMLKENMPEFPLYQLSCILFFLIPMVFI 221
>AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive
opsin protein.
Length = 371
Score = 21.4 bits (43), Expect = 7.9
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +3
Query: 543 NRVYLPIYVVMTPIWMLLPVLCIEXFMHLIKH 638
N+ L V M P V C++ +++ I H
Sbjct: 301 NKALLTPGVTMIPACTCKAVACLDPYVYAISH 332
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,120
Number of Sequences: 438
Number of extensions: 3575
Number of successful extensions: 18
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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