Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_I22
(655 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po... 204 1e-53
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 200 1e-52
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 30 0.25
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom... 28 1.0
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 27 2.4
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 26 5.5
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 25 7.2
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 25 9.5
>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 204 bits (497), Expect = 1e-53
Identities = 102/180 (56%), Positives = 127/180 (70%), Gaps = 2/180 (1%)
Frame = +2
Query: 122 SVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYXNVVXARRSSW 301
+ +E+ V AKLAEQAERY+ M MK V T EL+ EERNLLSVAY NV+ ARR+SW
Sbjct: 3 TTSREDAVYLAKLAEQAERYEGMVENMKSVASTDQELTVEERNLLSVAYKNVIGARRASW 62
Query: 302 RVISSIEQKTE--GSERKQQMAKEYXVKVXKELXEICYDVLGLLDKHLIPKASNPXSKVF 475
R++SSIEQK E G+ + ++ KEY K+ +EL IC D+L +L+KHLIP A++ SKVF
Sbjct: 63 RIVSSIEQKEESKGNTAQVELIKEYRQKIEQELDTICQDILTVLEKHLIPNAASAESKVF 122
Query: 476 YLKMKGXYYRYLAXVATGETXHSVVXDSXKAYQDAFEISKAKMQPTHPIRLGLALNFSVF 655
Y KMKG YYRYLA A GE S + Y+ A EI+ A++ PTHPIRLGLALNFSVF
Sbjct: 123 YYKMKGDYYRYLAEFAVGEKRQHSADQSLEGYKAASEIATAELAPTHPIRLGLALNFSVF 182
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 200 bits (489), Expect = 1e-52
Identities = 102/181 (56%), Positives = 128/181 (70%), Gaps = 2/181 (1%)
Frame = +2
Query: 119 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYXNVVXARRSS 298
MS +E V AKLAEQAERY++M MK+V + +LS EERNLLSVAY N++ ARR+S
Sbjct: 1 MSNSRENSVYLAKLAEQAERYEEMVENMKKVACSNDKLSVEERNLLSVAYKNIIGARRAS 60
Query: 299 WRVISSIEQKTE--GSERKQQMAKEYXVKVXKELXEICYDVLGLLDKHLIPKASNPXSKV 472
WR+ISSIEQK E G+ R+ + KEY K+ EL +IC+DVL +L+KHLIP A+ SKV
Sbjct: 61 WRIISSIEQKEESRGNTRQAALIKEYRKKIEDELSDICHDVLSVLEKHLIPAATTGESKV 120
Query: 473 FYLKMKGXYYRYLAXVATGETXHSVVXDSXKAYQDAFEISKAKMQPTHPIRLGLALNFSV 652
FY KMKG YYRYLA GE S +AY+ A +I+ A++ PT P+RLGLALNFSV
Sbjct: 121 FYYKMKGDYYRYLAEFTVGEVCKEAADSSLEAYKAASDIAVAELPPTDPMRLGLALNFSV 180
Query: 653 F 655
F
Sbjct: 181 F 181
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 30.3 bits (65), Expect = 0.25
Identities = 24/104 (23%), Positives = 42/104 (40%)
Frame = +2
Query: 95 ISSLPSSTMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYXN 274
I S+ S S EEL+ R + + Y+ MA + E E ++ + LLS Y N
Sbjct: 2998 IMSITMSDSSAYGEELM-RERFEHLLKAYEKMALMVAEQEEFNAKIEDMALKLLSEKYDN 3056
Query: 275 VVXARRSSWRVISSIEQKTEGSERKQQMAKEYXVKVXKELXEIC 406
+R+ + +E+ + EY + + L + C
Sbjct: 3057 EAYQAELFYRLSNCVEKVLHNKISITDLKTEYEEILEQTLKKEC 3100
>SPAC16A10.08c |mug74|SPAC589.01c|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 285
Score = 28.3 bits (60), Expect = 1.0
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +3
Query: 12 FSAREKLILC-----LNLLVQIHFSPSDKGISELVLFHRPRCPSTRKNWCNVPNWPNKLS 176
FS +E ILC L+L+V + ++ S+ + F +PR K N WPN+ S
Sbjct: 39 FSDKENSILCKQLKELDLVVSSNKEFLNEKTSDQISFLKPRETVVEKKLANGSIWPNETS 98
Query: 177 DM 182
+
Sbjct: 99 HL 100
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = -1
Query: 151 TLHQFFLVDGHRGRWKRTNSLMPLSEGEKCI*TSKFKHNISFSLALNGY 5
TL FL DG RWK + S+ K +++ +LNGY
Sbjct: 52 TLKDEFLADGLESRWKTNGEKSSSIRYPLVMEFSQLKEDLTNRASLNGY 100
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 25.8 bits (54), Expect = 5.5
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +3
Query: 24 EKLILCLNLLVQIHFSPSDKGISELVLFHRPRCPSTRKNWCNVPNW 161
EKL+ C HF +G+ + L RC +T CNVP W
Sbjct: 683 EKLVACTT-----HFY---EGVRKSALSSLWRCATTYYKVCNVPQW 720
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 66 FSPSDK-GISELVLFHRPRCPSTRKNWCNVPNWPNKLSDMTT 188
FSP +K + +L LFH + PS+++ V N + SD +T
Sbjct: 162 FSPPEKPSMKDLALFHGNKSPSSKETIPKVSN--SNSSDTST 201
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 3 VYPFSAREKLILCLNLL 53
++PF EK++LCL LL
Sbjct: 92 IFPFELCEKIVLCLVLL 108
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,445,610
Number of Sequences: 5004
Number of extensions: 42572
Number of successful extensions: 116
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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