Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_I21
         (513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein S12|Schizosa...   145   3e-36
SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein S12|Sch...   145   4e-36
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    31   0.13 
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    25   5.0  
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    25   6.7  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    25   8.8  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    25   8.8  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    25   8.8  

>SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein
           S12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score =  145 bits (352), Expect = 3e-36
 Identities = 67/113 (59%), Positives = 84/113 (74%)
 Frame = +1

Query: 97  MDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAXNCDEAAYKKLVQALCNE 276
           + V  +L+EVLK AL+H GL  G+ EA+KALD+RQA LCVL  +CD+ AY KLV+ALC E
Sbjct: 30  LSVEDSLKEVLKRALVHDGLARGIREASKALDRRQAHLCVLCESCDQEAYVKLVEALCAE 89

Query: 277 HQIPLVKVDNNKKLGXWAGLCKIDXDGXARKIVGCSCVVIKDFGXETPALDVL 435
            Q PLVKV + K LG WAGLC +D DG ARK+VGCSCV + D+G ++ AL  L
Sbjct: 90  SQTPLVKVADPKILGEWAGLCVLDRDGNARKVVGCSCVAVTDYGEDSVALQTL 142


>SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein
           S12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 145

 Score =  145 bits (351), Expect = 4e-36
 Identities = 66/115 (57%), Positives = 85/115 (73%)
 Frame = +1

Query: 97  MDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAXNCDEAAYKKLVQALCNE 276
           + V  AL+EVLK AL+H GL  G+ EA+KALD+RQA LCVL  +CD+ AY KLV+ALC E
Sbjct: 27  VSVEDALKEVLKRALVHDGLARGIREASKALDRRQAHLCVLCESCDQEAYVKLVEALCAE 86

Query: 277 HQIPLVKVDNNKKLGXWAGLCKIDXDGXARKIVGCSCVVIKDFGXETPALDVLXD 441
            + PL+KV + K LG WAGLC +D DG ARK+VGCSCV + D+G ++ AL  L +
Sbjct: 87  SETPLIKVADPKVLGEWAGLCVLDRDGNARKVVGCSCVAVTDYGEDSAALQKLLE 141


>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 30.7 bits (66), Expect = 0.13
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +1

Query: 160 HGLHEAAKALDKRQAVLCVLAXNCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 321
           +GL+     ++ ++A L ++A + D       + ALC +  +P   V N  +LG
Sbjct: 134 YGLNHVVALIEAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLG 187


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 58  VEVPTNPILSGNNMDVNVALQEVLKTALIHGGLVHGLH 171
           +E+   P LS    D + +   VL   L+HGG +HG H
Sbjct: 445 LEIDLEPYLS-ETADKSESHVYVLHGVLVHGGDLHGGH 481


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +2

Query: 278 IRFHWSRLTTTKSLXNGLVSARLTXMAXQGKLSA 379
           +R+HWS++    +   GLV   ++ +  +G  SA
Sbjct: 258 VRYHWSQILGVVACIGGLVLLVVSDVISRGDYSA 291


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +1

Query: 139 LIHGGLVHGLHEAAKALDKRQAVLCVLAXN-CDE 237
           L+H GL+H L  + K          +LA N CDE
Sbjct: 896 LLHSGLIHNLLLSLKKFGSSSLRTFLLAMNTCDE 929


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +2

Query: 218 WLXTVMKPHTRNLFRLCATNIRFHWSRLTTTKSL 319
           ++ +V  P    L+RLC++  R  W     ++SL
Sbjct: 220 FILSVFHPDAARLYRLCSSLKRICWELYDPSRSL 253


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 154 DHHGLKLSLAPLAVLHSRPC 95
           D  GL  ++  L+++HSRPC
Sbjct: 529 DEMGLGKTIEVLSLIHSRPC 548


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,978,728
Number of Sequences: 5004
Number of extensions: 34857
Number of successful extensions: 109
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)