Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_I19
         (400 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc...   130   8e-32
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa...   130   8e-32
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz...    38   6e-04
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    27   1.4  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    25   4.3  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    25   5.7  
SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family Sec14|Schi...    24   10.0 

>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score =  130 bits (314), Expect = 8e-32
 Identities = 60/80 (75%), Positives = 69/80 (86%)
 Frame = +2

Query: 65  DIRVTVKGGGHVAQVYAIRQAISKALIAFYXKYVDEASKKEIKDILVQYDRSLLVADPRR 244
           DIRV V GGGHV+Q+YAIRQAISKA++A+Y K+VDE SK E+K  L+ YDR+LLVADPRR
Sbjct: 61  DIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRR 120

Query: 245 CEPKKFGGPGARARYQKSYR 304
            EPKKFGG GARAR QKSYR
Sbjct: 121 MEPKKFGGHGARARQQKSYR 140



 Score = 23.8 bits (49), Expect = 10.0
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 7  RYKLQEPILLLGKEKFSMV 63
          R K+ EPIL+ G +KF+ V
Sbjct: 42 RMKVYEPILVAGADKFAGV 60


>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 140

 Score =  130 bits (314), Expect = 8e-32
 Identities = 60/80 (75%), Positives = 69/80 (86%)
 Frame = +2

Query: 65  DIRVTVKGGGHVAQVYAIRQAISKALIAFYXKYVDEASKKEIKDILVQYDRSLLVADPRR 244
           DIRV V GGGHV+Q+YAIRQAISKA++A+Y K+VDE SK E+K  L+ YDR+LLVADPRR
Sbjct: 61  DIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRR 120

Query: 245 CEPKKFGGPGARARYQKSYR 304
            EPKKFGG GARAR QKSYR
Sbjct: 121 MEPKKFGGHGARARQQKSYR 140



 Score = 23.8 bits (49), Expect = 10.0
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 7  RYKLQEPILLLGKEKFSMV 63
          R K+ EPIL+ G +KF+ V
Sbjct: 42 RMKVYEPILVAGADKFAGV 60


>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 37.9 bits (84), Expect = 6e-04
 Identities = 28/76 (36%), Positives = 39/76 (51%)
 Frame = +2

Query: 62  FDIRVTVKGGGHVAQVYAIRQAISKALIAFYXKYVDEASKKEIKDILVQYDRSLLVADPR 241
           +++  TV GGG   Q  A+  AISK+LI      + E S K+     V  D   ++ D R
Sbjct: 63  YNVWATVHGGGPTGQSGAVHAAISKSLI------LQEPSLKQ-----VIKDTHCVLNDKR 111

Query: 242 RCEPKKFGGPGARARY 289
           + E KK G P AR +Y
Sbjct: 112 KVERKKTGQPKARKKY 127


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
 Frame = +2

Query: 2   DAGTNFKSQSFCSARKNSPWFDIRVTVK-GGGHVAQVYAIRQAISKALIAFYXKYVDEAS 178
           D+    K QS C+ +  +P    R  VK G G    VY+ RQ  +   +A     +++  
Sbjct: 366 DSAVLAKLQSICNPK--NPTLLYRNFVKIGQGASGDVYSARQVGTNLSVAIKKMNINQQP 423

Query: 179 KKE--IKDILV 205
           KKE  + +ILV
Sbjct: 424 KKEFIVNEILV 434


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 285 DTRNLTVKPSTKPSGGIVAASCCH 356
           D  N+ VKP+  P+  +    CCH
Sbjct: 566 DRFNVIVKPALNPAERMTVRICCH 589


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 143 IAFYXKYVDEASKKEIKDILVQYDRSLL 226
           I FY  + D +S+  I DI+ +Y+   L
Sbjct: 424 IHFYLAFPDNSSRDGIDDIIAEYETGRL 451


>SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family
           Sec14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 286

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 161 YVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGG 268
           ++DEA+ K+I  +   Y  +LL   P    P K GG
Sbjct: 226 FLDEATVKKIHILGSNYKSALLEQIPADNLPAKLGG 261


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,584,922
Number of Sequences: 5004
Number of extensions: 26664
Number of successful extensions: 85
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)