Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_I19
         (400 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical pr...   135   1e-32
Z93372-4|CAB07546.1|  301|Caenorhabditis elegans Hypothetical pr...    31   0.30 
L11247-4|AAK84520.1|  392|Caenorhabditis elegans Hypothetical pr...    28   2.8  
AC006663-2|AAF39900.2|  603|Caenorhabditis elegans Hypothetical ...    27   5.0  

>Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical
           protein T01C3.6 protein.
          Length = 144

 Score =  135 bits (327), Expect = 1e-32
 Identities = 60/80 (75%), Positives = 71/80 (88%)
 Frame = +2

Query: 65  DIRVTVKGGGHVAQVYAIRQAISKALIAFYXKYVDEASKKEIKDILVQYDRSLLVADPRR 244
           DIR+ V GGGHVAQ+YA+RQA++KAL+A+Y KYVDE SK+E+K+I   YD+SLLVADPRR
Sbjct: 65  DIRIRVSGGGHVAQIYAVRQALAKALVAYYHKYVDEQSKRELKNIFAAYDKSLLVADPRR 124

Query: 245 CEPKKFGGPGARARYQKSYR 304
            E KKFGGPGARARYQKSYR
Sbjct: 125 RESKKFGGPGARARYQKSYR 144



 Score = 30.7 bits (66), Expect = 0.40
 Identities = 13/19 (68%), Positives = 16/19 (84%)
 Frame = +1

Query: 7   RYKLQEPILLLGKEKFSMV 63
           R KLQEP+LL+GKE+F  V
Sbjct: 46  RIKLQEPLLLVGKERFQDV 64


>Z93372-4|CAB07546.1|  301|Caenorhabditis elegans Hypothetical
           protein BE10.4 protein.
          Length = 301

 Score = 31.1 bits (67), Expect = 0.30
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 161 YVDEASKKEIKDILVQYDRSLLVADPRRCE 250
           + DE  +KE+ D+  QYDRS+ + D  R E
Sbjct: 151 FCDEVQQKEVGDLFHQYDRSIEIIDKVRHE 180


>L11247-4|AAK84520.1|  392|Caenorhabditis elegans Hypothetical
           protein F09G8.3 protein.
          Length = 392

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 221 LLVADPRRCEPKKFGGPGARARY 289
           LL  DPR+ E  K   PGARA++
Sbjct: 365 LLTLDPRKNERSKVNQPGARAKW 387


>AC006663-2|AAF39900.2|  603|Caenorhabditis elegans Hypothetical
           protein H24K24.4 protein.
          Length = 603

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 309 PSTKPSGGIVAASCCHCDIIGWCTIKNIK 395
           P+ +  G I+   CC    IG C +KNI+
Sbjct: 430 PAPEDPGTILLDICCGTGTIGQCLLKNIQ 458


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,912,925
Number of Sequences: 27780
Number of extensions: 152076
Number of successful extensions: 339
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)