Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_I16
(635 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P23396 Cluster: 40S ribosomal protein S3; n=174; Eukary... 354 9e-97
UniRef50_Q59N00 Cluster: Likely cytosolic ribosomal protein S3; ... 242 4e-63
UniRef50_Q38EW1 Cluster: 40S ribosomal protein S3, putative; n=4... 233 3e-60
UniRef50_Q22AV9 Cluster: KH domain containing protein; n=3; Olig... 208 9e-53
UniRef50_A7NTL0 Cluster: Chromosome chr18 scaffold_1, whole geno... 198 9e-50
UniRef50_A2DIM3 Cluster: Ribosomal protein S3, putative; n=1; Tr... 198 9e-50
UniRef50_Q8SQM3 Cluster: 40S ribosomal protein S3; n=1; Encephal... 172 7e-42
UniRef50_A7NXL1 Cluster: Chromosome chr5 scaffold_2, whole genom... 163 2e-39
UniRef50_Q7QNT9 Cluster: GLP_157_11435_12088; n=1; Giardia lambl... 136 3e-31
UniRef50_Q8U004 Cluster: 30S ribosomal protein S3P; n=5; Euryarc... 135 1e-30
UniRef50_Q01BA3 Cluster: Putative ribosomal protein; n=1; Ostreo... 126 6e-28
UniRef50_Q8TRU1 Cluster: 30S ribosomal protein S3P; n=8; Euryarc... 124 2e-27
UniRef50_A3CT03 Cluster: 30S ribosomal protein S3P; n=4; Archaea... 120 4e-26
UniRef50_P20281 Cluster: 30S ribosomal protein S3P; n=5; Halobac... 119 5e-26
UniRef50_Q8TX35 Cluster: 30S ribosomal protein S3P; n=1; Methano... 118 1e-25
UniRef50_A1RXG6 Cluster: 30S ribosomal protein S3P; n=2; Thermof... 115 1e-24
UniRef50_UPI00015BB204 Cluster: SSU ribosomal protein S3P; n=1; ... 114 1e-24
UniRef50_O26116 Cluster: 30S ribosomal protein S3P; n=3; Methano... 114 1e-24
UniRef50_Q6LXE7 Cluster: 30S ribosomal protein S3P; n=5; Methano... 114 1e-24
UniRef50_O28360 Cluster: 30S ribosomal protein S3P; n=1; Archaeo... 108 1e-22
UniRef50_Q9UXA0 Cluster: 30S ribosomal protein S3P; n=2; Thermop... 103 4e-21
UniRef50_Q4JB46 Cluster: 30S ribosomal protein S3P; n=3; Sulfolo... 103 4e-21
UniRef50_A3DNB3 Cluster: 30S ribosomal protein S3P; n=1; Staphyl... 96 7e-19
UniRef50_Q8ZWI0 Cluster: 30S ribosomal protein S3P; n=6; Pyrobac... 95 1e-18
UniRef50_UPI00005A35DE Cluster: PREDICTED: similar to 40S riboso... 94 2e-18
UniRef50_Q9HIR5 Cluster: 30S ribosomal protein S3P; n=4; Thermop... 92 1e-17
UniRef50_A5DF25 Cluster: Putative uncharacterized protein; n=1; ... 90 5e-17
UniRef50_A0RVX9 Cluster: 30S ribosomal protein S3P; n=2; Thermop... 87 4e-16
UniRef50_A3H696 Cluster: Ribosomal protein S3-like; n=1; Caldivi... 86 6e-16
UniRef50_Q673S3 Cluster: Ribosomal protein S3; n=2; environmenta... 85 1e-15
UniRef50_Q8LNX7 Cluster: Putative ribosomal protein S3; n=1; Zin... 83 5e-15
UniRef50_A7NXL5 Cluster: Chromosome chr5 scaffold_2, whole genom... 67 4e-10
UniRef50_A6R2L3 Cluster: Predicted protein; n=1; Ajellomyces cap... 65 2e-09
UniRef50_A5ATU8 Cluster: Putative uncharacterized protein; n=1; ... 64 3e-09
UniRef50_A7QEK7 Cluster: Chromosome chr17 scaffold_85, whole gen... 64 4e-09
UniRef50_Q74MZ4 Cluster: 30S ribosomal protein S3P; n=2; Nanoarc... 64 4e-09
UniRef50_Q3LWD3 Cluster: Ribosomal protein S3; n=1; Bigelowiella... 63 5e-09
UniRef50_Q9RXJ6 Cluster: 30S ribosomal protein S3; n=2; Deinococ... 61 3e-08
UniRef50_Q7MTL9 Cluster: 30S ribosomal protein S3; n=19; Bactero... 52 9e-06
UniRef50_A5B260 Cluster: Putative uncharacterized protein; n=1; ... 52 1e-05
UniRef50_Q6KI49 Cluster: 30S ribosomal protein S3; n=9; Mycoplas... 51 2e-05
UniRef50_A6EHQ8 Cluster: 30S ribosomal protein S3; n=1; Pedobact... 49 8e-05
UniRef50_Q12GW5 Cluster: 30S ribosomal protein S3; n=197; Bacter... 49 1e-04
UniRef50_O83225 Cluster: 30S ribosomal protein S3; n=1; Treponem... 48 2e-04
UniRef50_Q7UN14 Cluster: 30S ribosomal protein S3; n=3; Planctom... 48 2e-04
UniRef50_A1KB21 Cluster: 30S ribosomal protein S3; n=67; cellula... 47 4e-04
UniRef50_P46772 Cluster: 30S ribosomal protein S3; n=5; Thermoto... 46 8e-04
UniRef50_Q8KAH8 Cluster: 30S ribosomal protein S3; n=10; Chlorob... 45 0.002
UniRef50_A6NXD5 Cluster: Putative uncharacterized protein; n=1; ... 44 0.004
UniRef50_Q2JFH0 Cluster: 30S ribosomal protein S3; n=94; Bacteri... 43 0.007
UniRef50_UPI00015BD7E8 Cluster: UPI00015BD7E8 related cluster; n... 42 0.012
UniRef50_Q6A6N2 Cluster: 30S ribosomal protein S3; n=27; Bacteri... 42 0.012
UniRef50_P0A4C3 Cluster: 30S ribosomal protein S3; n=39; Bacteri... 41 0.022
UniRef50_Q04G79 Cluster: 30S ribosomal protein S3; n=1; Oenococc... 40 0.050
UniRef50_P46247 Cluster: 30S ribosomal protein S3; n=3; Entomopl... 40 0.066
UniRef50_Q9PQQ4 Cluster: 30S ribosomal protein S3; n=1; Ureaplas... 39 0.088
UniRef50_Q9XD30 Cluster: 30S ribosomal protein S3; n=4; Leptospi... 39 0.088
UniRef50_Q3ZZL8 Cluster: 30S ribosomal protein S3; n=18; Bacteri... 39 0.12
UniRef50_Q2GED3 Cluster: 30S ribosomal protein S3; n=1; Neoricke... 38 0.15
UniRef50_P56798 Cluster: Chloroplast 30S ribosomal protein S3; n... 38 0.27
UniRef50_A0MNG0 Cluster: Putative uncharacterized protein; n=1; ... 37 0.47
UniRef50_Q11HQ8 Cluster: 30S ribosomal protein S3; n=167; cellul... 36 0.62
UniRef50_Q52188 Cluster: TraC precursor; n=9; root|Rep: TraC pre... 36 1.1
UniRef50_Q20F10 Cluster: Chloroplast 30S ribosomal protein S3; n... 36 1.1
UniRef50_UPI0000DA2268 Cluster: PREDICTED: hypothetical protein;... 34 2.5
UniRef50_A5AUQ8 Cluster: Putative uncharacterized protein; n=1; ... 34 3.3
UniRef50_Q2RZ88 Cluster: Putative uncharacterized protein; n=1; ... 33 7.6
UniRef50_Q5XIY2 Cluster: Transmembrane protein 56; n=8; Euteleos... 33 7.6
UniRef50_Q6YR15 Cluster: 30S ribosomal protein S3; n=163; Firmic... 33 7.6
>UniRef50_P23396 Cluster: 40S ribosomal protein S3; n=174;
Eukaryota|Rep: 40S ribosomal protein S3 - Homo sapiens
(Human)
Length = 243
Score = 354 bits (871), Expect = 9e-97
Identities = 176/201 (87%), Positives = 184/201 (91%)
Frame = +1
Query: 31 MAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVL 210
MAV ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+VL
Sbjct: 1 MAVQ-ISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVL 59
Query: 211 GEKGRXIRELTSVVQKRFNIPEQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRAC 390
GEKGR IRELT+VVQKRF PE SV LYAEKVATRGLCAIAQAESLRYKL+GGLAVRRAC
Sbjct: 60 GEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRAC 119
Query: 391 YGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVHGLMIHSGDPCNDYVNTATRHVLLRQ 570
YGVLRFIMESGA+GCEVVVSGKLRGQRAKSMKFV GLMIHSGDP N YV+TA RHVLLRQ
Sbjct: 120 YGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQ 179
Query: 571 GVLXIKVKIMLPWDQQGKNGP 633
GVL IKVKIMLPWD GK GP
Sbjct: 180 GVLGIKVKIMLPWDPTGKIGP 200
>UniRef50_Q59N00 Cluster: Likely cytosolic ribosomal protein S3;
n=4; Saccharomycetales|Rep: Likely cytosolic ribosomal
protein S3 - Candida albicans (Yeast)
Length = 251
Score = 242 bits (593), Expect = 4e-63
Identities = 115/185 (62%), Positives = 142/185 (76%)
Frame = +1
Query: 46 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 225
+SKK+K V DGVF AELNEF TRELAE GY+GVEVR TP + E+I+ A+ TQ VLGE+GR
Sbjct: 6 LSKKKKLVADGVFYAELNEFFTRELAEQGYAGVEVRKTPSKLEVIVKASNTQGVLGEQGR 65
Query: 226 XIRELTSVVQKRFNIPEQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 405
I ELTS++ KRF + + + +YAE+V RGL A QAE+L+ KL+ GL +RRA YGVLR
Sbjct: 66 RIHELTSLIVKRFKLSPEGIAIYAERVEERGLSAAVQAEALKAKLLSGLPIRRAAYGVLR 125
Query: 406 FIMESGARGCEVVVSGKLRGQRAKSMKFVHGLMIHSGDPCNDYVNTATRHVLLRQGVLXI 585
F M +GA+G EVV+SGKLR RAKS K+ G MIHSG P D+++ A RHVL+RQGVL I
Sbjct: 126 FAMGAGAKGVEVVISGKLRAARAKSQKYADGFMIHSGQPTRDFIDIAIRHVLMRQGVLGI 185
Query: 586 KVKIM 600
KVKIM
Sbjct: 186 KVKIM 190
>UniRef50_Q38EW1 Cluster: 40S ribosomal protein S3, putative; n=4;
Trypanosoma|Rep: 40S ribosomal protein S3, putative -
Trypanosoma brucei
Length = 266
Score = 233 bits (570), Expect = 3e-60
Identities = 113/187 (60%), Positives = 143/187 (76%)
Frame = +1
Query: 46 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 225
+SKKR V DGVF AEL EFL RELA+DG++GVE RVTP R+EI+I +T+T+ VLGEKGR
Sbjct: 56 LSKKRMMVRDGVFYAELFEFLKRELADDGFAGVEHRVTPTRTEIVIRSTKTREVLGEKGR 115
Query: 226 XIRELTSVVQKRFNIPEQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 405
IRELT+ +Q+RFN E + L+AE+V RGL A+AQAESLR+KL+ L VRRA G++R
Sbjct: 116 RIRELTACLQQRFNYKEGKLQLFAERVEVRGLSAMAQAESLRFKLLSNLQVRRAAMGIIR 175
Query: 406 FIMESGARGCEVVVSGKLRGQRAKSMKFVHGLMIHSGDPCNDYVNTATRHVLLRQGVLXI 585
++MESGA+GCEV + GK++GQRAKSM F G MI SG +V+TATRH LR G + +
Sbjct: 176 YVMESGAKGCEVTIGGKIKGQRAKSMTFRDGYMIKSGTAHKHFVDTATRHCHLRAGTIGV 235
Query: 586 KVKIMLP 606
VKIM P
Sbjct: 236 NVKIMRP 242
>UniRef50_Q22AV9 Cluster: KH domain containing protein; n=3;
Oligohymenophorea|Rep: KH domain containing protein -
Tetrahymena thermophila SB210
Length = 253
Score = 208 bits (508), Expect = 9e-53
Identities = 91/189 (48%), Positives = 138/189 (73%)
Frame = +1
Query: 46 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 225
I+KK+KFV DGVF AEL+ F ++ L + GY+G+EVR TP ++EI I AT+ Q V+G +G+
Sbjct: 18 INKKKKFVADGVFNAELHSFFSKSLQDAGYAGIEVRRTPTKTEIRIKATKPQQVIGVEGK 77
Query: 226 XIRELTSVVQKRFNIPEQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 405
+ELT +QKRF + + ++AE + +GLCA AQ E++ YKL+ + VR A +++
Sbjct: 78 KHKELTQFLQKRFGYSDDQIQIWAEPIKFKGLCASAQVEAMNYKLLKDVPVRLAANYIIK 137
Query: 406 FIMESGARGCEVVVSGKLRGQRAKSMKFVHGLMIHSGDPCNDYVNTATRHVLLRQGVLXI 585
+++ GA+GCE+++SGKL+ QRAK+MKF G MI +G P NDY++ A RHV +QG++ +
Sbjct: 138 SVIQDGAKGCEIIISGKLKQQRAKTMKFKQGYMICTGQPKNDYIDVAVRHVFFKQGIMGV 197
Query: 586 KVKIMLPWD 612
KVKIMLP++
Sbjct: 198 KVKIMLPYE 206
>UniRef50_A7NTL0 Cluster: Chromosome chr18 scaffold_1, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr18 scaffold_1, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 617
Score = 198 bits (483), Expect = 9e-50
Identities = 117/196 (59%), Positives = 131/196 (66%)
Frame = +1
Query: 37 VNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGE 216
V +SKKRKF DGVF A LNE LTREL E+GYSG EVRVTP+ +EIII AT+T +VLGE
Sbjct: 2 VTQMSKKRKFAVDGVFFAGLNEVLTRELVENGYSGDEVRVTPMCTEIIIRATQTHNVLGE 61
Query: 217 KGRXIRELTSVVQKRFNIPEQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYG 396
KG+ I+ELTSVVQKRF E SV L AEKV RG AIAQAESLRYKL+GGLA+
Sbjct: 62 KGKKIKELTSVVQKRFEFLENSVELCAEKVNNRGFYAIAQAESLRYKLLGGLAM------ 115
Query: 397 VLRFIMESGARGCEVVVSGKLRGQRAKSMKFVHGLMIHSGDPCNDYVNTATRHVLLRQGV 576
L QRAKSMKF G +I SG P DY++ A RHV LRQGV
Sbjct: 116 --------------------LCAQRAKSMKFKDGYLISSGQPVKDYIDLAVRHV-LRQGV 154
Query: 577 LXIKVKIMLPWDQQGK 624
L IKVKIM WD +GK
Sbjct: 155 LGIKVKIMFNWDPKGK 170
>UniRef50_A2DIM3 Cluster: Ribosomal protein S3, putative; n=1;
Trichomonas vaginalis G3|Rep: Ribosomal protein S3,
putative - Trichomonas vaginalis G3
Length = 216
Score = 198 bits (483), Expect = 9e-50
Identities = 91/201 (45%), Positives = 132/201 (65%)
Frame = +1
Query: 31 MAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVL 210
M +K R+ + G+F AELNE LTREL ++GY G EVR TP R+EIII A T+ +
Sbjct: 1 MKAQRCTKVRRIIETGLFYAELNELLTRELTKEGYGGCEVRQTPTRTEIIIKAANTKEFV 60
Query: 211 GEKGRXIRELTSVVQKRFNIPEQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRAC 390
GR ++E+ ++QKR+ + E S+ ++ +++ +GL A+ Q ESLRYKLI + RRA
Sbjct: 61 DNHGRRLQEVRMMIQKRWRLKEDSLEIFIDRIQRKGLSALNQLESLRYKLIARIPARRAA 120
Query: 391 YGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVHGLMIHSGDPCNDYVNTATRHVLLRQ 570
Y ++RF+M++GARGCEV +SGKLRG RA + K+ G M+ SGD +V A H+ ++Q
Sbjct: 121 YSIIRFVMDAGARGCEVAISGKLRGARASTSKYKEGYMVKSGDVTKQFVTQAVGHIPMKQ 180
Query: 571 GVLXIKVKIMLPWDQQGKNGP 633
+ I+V IML D G +GP
Sbjct: 181 ATIGIRVLIMLAQDPSGISGP 201
>UniRef50_Q8SQM3 Cluster: 40S ribosomal protein S3; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S3 -
Encephalitozoon cuniculi
Length = 228
Score = 172 bits (418), Expect = 7e-42
Identities = 79/191 (41%), Positives = 124/191 (64%)
Frame = +1
Query: 61 KFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRXIREL 240
+F+ +G+ AEL EF + L +G+S +E+R+ +II+ + +GEK +R+
Sbjct: 21 RFMKNGLMNAELKEFFEKALVNEGFSTMELRMQETPIKIILKVAKPHEAIGEKKFRLRQF 80
Query: 241 TSVVQKRFNIPEQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMES 420
+ +R +P++SV + EKV +GLCA+ QA +R K++GG+ RRA L+ +
Sbjct: 81 QHLAAQRLEVPDESVEIVVEKVHEKGLCALIQANFIREKILGGVQYRRAVNMALKTARHA 140
Query: 421 GARGCEVVVSGKLRGQRAKSMKFVHGLMIHSGDPCNDYVNTATRHVLLRQGVLXIKVKIM 600
A+GC+++VSGKL+GQRAKS+KF G++IHSGD DY+NT V +QGV+ I+V+IM
Sbjct: 141 KAQGCQIIVSGKLKGQRAKSVKFQDGVLIHSGDAVKDYINTGYATVETKQGVIGIQVRIM 200
Query: 601 LPWDQQGKNGP 633
LP+D +G GP
Sbjct: 201 LPYDPEGVLGP 211
>UniRef50_A7NXL1 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr5 scaffold_2, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 243
Score = 163 bits (397), Expect = 2e-39
Identities = 90/154 (58%), Positives = 106/154 (68%)
Frame = +1
Query: 172 EIIIMATRTQSVLGEKGRXIRELTSVVQKRFNIPEQSVXLYAEKVATRGLCAIAQAESLR 351
EIII AT+TQ+VLG+KGR IRELTSVVQKRF E +V LYAEK R AIAQAESLR
Sbjct: 101 EIIIHATQTQNVLGKKGRKIRELTSVVQKRFEFLENNVELYAEKFNNRVFYAIAQAESLR 160
Query: 352 YKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVHGLMIHSGDPCND 531
+KL+GGL VRRA YGVL F+MESG +GCEV+ +I SG P D
Sbjct: 161 FKLLGGLVVRRAGYGVLSFVMESGTKGCEVI----------------GWYIISSGQPVKD 204
Query: 532 YVNTATRHVLLRQGVLXIKVKIMLPWDQQGKNGP 633
Y+N+ RHVLL+QGVL IKVKI++ QG+ GP
Sbjct: 205 YINSVVRHVLLKQGVLSIKVKIIVRLGSQGQAGP 238
>UniRef50_Q7QNT9 Cluster: GLP_157_11435_12088; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_157_11435_12088 - Giardia lamblia
ATCC 50803
Length = 217
Score = 136 bits (330), Expect = 3e-31
Identities = 66/182 (36%), Positives = 110/182 (60%)
Frame = +1
Query: 61 KFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRXIREL 240
K++ D + +AEL+EF +REL + GY+ + T +II + V+G+ + ++
Sbjct: 16 KYLNDCIMEAELHEFFSRELVDAGYASCSLCRTIDSICVIIQCAEPEVVMGDNHYRLHKI 75
Query: 241 TSVVQKRFNIPEQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMES 420
++ RF ++ ++ +K+ RGL A ++LR KL + +RRA Y ++R M +
Sbjct: 76 EYLLAGRFMCDPKNFNIWVDKIIKRGLSAEIMVDNLRAKLEEAMPIRRAAYSIIRTAMRA 135
Query: 421 GARGCEVVVSGKLRGQRAKSMKFVHGLMIHSGDPCNDYVNTATRHVLLRQGVLXIKVKIM 600
GA GCEV+V+GKLR QRA++ KF G +I +G P ++ ATRH+ +RQGV+ +KV+I
Sbjct: 136 GAAGCEVIVAGKLRAQRARANKFKEGCLISTGHPKRIFLAEATRHIKMRQGVIGVKVRIY 195
Query: 601 LP 606
P
Sbjct: 196 NP 197
>UniRef50_Q8U004 Cluster: 30S ribosomal protein S3P; n=5;
Euryarchaeota|Rep: 30S ribosomal protein S3P -
Pyrococcus furiosus
Length = 210
Score = 135 bits (326), Expect = 1e-30
Identities = 71/184 (38%), Positives = 109/184 (59%)
Frame = +1
Query: 55 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRXIR 234
+R F+ + V + ++EFL +EL GY G++++ TP+ +++II A V+G GR IR
Sbjct: 4 ERYFIREAVREMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIR 63
Query: 235 ELTSVVQKRFNIPEQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 414
ELT +++K+F + + + E++ L A QA L L G+ RRA Y LR IM
Sbjct: 64 ELTRILEKQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAYAALRAIM 121
Query: 415 ESGARGCEVVVSGKLRGQRAKSMKFVHGLMIHSGDPCNDYVNTATRHVLLRQGVLXIKVK 594
+GARG E+ +SGKL G+RAKS++F G + G+P V+ LL+ GV+ +KV
Sbjct: 122 NNGARGVEIRLSGKLTGERAKSIRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVA 181
Query: 595 IMLP 606
IM P
Sbjct: 182 IMPP 185
>UniRef50_Q01BA3 Cluster: Putative ribosomal protein; n=1;
Ostreococcus tauri|Rep: Putative ribosomal protein -
Ostreococcus tauri
Length = 145
Score = 126 bits (303), Expect = 6e-28
Identities = 58/86 (67%), Positives = 70/86 (81%)
Frame = +1
Query: 376 VRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVHGLMIHSGDPCNDYVNTATRH 555
VR ACYGVLR+IMESGA+G EVVVSGKLRGQRAK+MKF G MI SG+P DY+ + TRH
Sbjct: 30 VRSACYGVLRYIMESGAKGAEVVVSGKLRGQRAKAMKFKDGYMISSGNPVRDYIVSCTRH 89
Query: 556 VLLRQGVLXIKVKIMLPWDQQGKNGP 633
LLRQG + ++VKIML D +G++GP
Sbjct: 90 ALLRQGTIGMRVKIMLDHDPKGRDGP 115
>UniRef50_Q8TRU1 Cluster: 30S ribosomal protein S3P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S3P -
Methanosarcina acetivorans
Length = 318
Score = 124 bits (299), Expect = 2e-27
Identities = 65/184 (35%), Positives = 107/184 (58%)
Frame = +1
Query: 55 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRXIR 234
++KFV DG KA ++E+ +L+ GY G+E+ TP+ ++I+I + + V+G+ G+ IR
Sbjct: 4 EKKFVNDGYVKASMDEYFAEQLSRAGYGGMELNRTPMGTQIVIYSEKPGMVIGKAGKVIR 63
Query: 235 ELTSVVQKRFNIPEQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 414
+LT V ++++ + A++V L A A L + G R+A + LR +M
Sbjct: 64 KLTRDVANKYSLENPQID--AQEVKRPELNAQMMASRLAASIERGWYFRKAGHNTLRAVM 121
Query: 415 ESGARGCEVVVSGKLRGQRAKSMKFVHGLMIHSGDPCNDYVNTATRHVLLRQGVLXIKVK 594
+GA GCEVV+SGKL G R++ KFV G + HSG+P + V+ + + G L KV+
Sbjct: 122 NAGALGCEVVISGKLTGARSRVEKFVDGYIKHSGNPVEEVVDEGFAVAVKKLGTLGCKVR 181
Query: 595 IMLP 606
I+ P
Sbjct: 182 IIQP 185
>UniRef50_A3CT03 Cluster: 30S ribosomal protein S3P; n=4;
Archaea|Rep: 30S ribosomal protein S3P - Methanoculleus
marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
Length = 234
Score = 120 bits (288), Expect = 4e-26
Identities = 63/184 (34%), Positives = 103/184 (55%)
Frame = +1
Query: 55 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRXIR 234
++KF+ DGV + +FLT+EL GY G+++ TP+ +++ I A + V+G+ G+ +R
Sbjct: 4 EKKFITDGVRNVRVEKFLTKELKRAGYGGMDIARTPLGTQVTIFAEKPGIVIGKGGKQVR 63
Query: 235 ELTSVVQKRFNIPEQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 414
+LT + ++I V + ++V A AE L L G R+A +R IM
Sbjct: 64 QLTQDLATDYDIESPQVEV--QQVQNPNFNAQIMAERLANALERGWYFRKAGSSTIRRIM 121
Query: 415 ESGARGCEVVVSGKLRGQRAKSMKFVHGLMIHSGDPCNDYVNTATRHVLLRQGVLXIKVK 594
ESGA GCEV+V+GKL G R+++ KF G + H G+P V + + G + ++VK
Sbjct: 122 ESGALGCEVIVAGKLTGSRSRTQKFTEGYIKHCGEPSETIVEKGYALAIKKLGTIGVQVK 181
Query: 595 IMLP 606
I+ P
Sbjct: 182 IVPP 185
>UniRef50_P20281 Cluster: 30S ribosomal protein S3P; n=5;
Halobacteriaceae|Rep: 30S ribosomal protein S3P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 304
Score = 119 bits (287), Expect = 5e-26
Identities = 60/187 (32%), Positives = 114/187 (60%)
Frame = +1
Query: 46 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 225
++ +++F+ DG+ + +++EF EL GY G++V TP+ ++I++ A + V+G+ G+
Sbjct: 1 MADEQQFIEDGLQRTQIDEFFAEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 226 XIRELTSVVQKRFNIPEQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 405
IR++T+ ++ RFN+ + V + ++V L A A+ L L G R+A + +
Sbjct: 61 NIRKITTELEDRFNLDDPQVDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 406 FIMESGARGCEVVVSGKLRGQRAKSMKFVHGLMIHSGDPCNDYVNTATRHVLLRQGVLXI 585
IMESGA G E+V+SGK+ G R++ KF G + H+G+P + V++ +++ G + +
Sbjct: 119 RIMESGALGAEIVLSGKVTGARSRVEKFNRGYVKHNGEPAEEIVDSGVGVAVMKLGTIGV 178
Query: 586 KVKIMLP 606
+VKI+ P
Sbjct: 179 RVKIIPP 185
>UniRef50_Q8TX35 Cluster: 30S ribosomal protein S3P; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S3P -
Methanopyrus kandleri
Length = 227
Score = 118 bits (284), Expect = 1e-25
Identities = 65/193 (33%), Positives = 107/193 (55%)
Frame = +1
Query: 28 IMAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSV 207
+M N+ +KFV G+ K EL+E+L EL GY G+ ++ P ++II R
Sbjct: 2 VMYGENVPVHKKFVQYGMLKTELDEYLEEELGRAGYGGMRLQRVPNATKIIAYVERPAIA 61
Query: 208 LGEKGRXIRELTSVVQKRFNIPEQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRA 387
+G +GR IR + VQ+RF + + V + +++ + L A L L G+ RRA
Sbjct: 62 IGRRGRNIRRVEEEVQERFPLLGR-VSIEVKELPSPELNPRVVARRLASALERGIHFRRA 120
Query: 388 CYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVHGLMIHSGDPCNDYVNTATRHVLLR 567
YG LR IM +GA+G +++SGKL G RA++ KF+ G + + G+P ++Y+ + +
Sbjct: 121 AYGALRRIMNAGAKGAMIILSGKLIGARARTEKFMEGAVKYCGEPGDEYMIEGYVQAVTK 180
Query: 568 QGVLXIKVKIMLP 606
G + + V+IM P
Sbjct: 181 PGAIGVTVRIMPP 193
>UniRef50_A1RXG6 Cluster: 30S ribosomal protein S3P; n=2;
Thermofilum pendens Hrk 5|Rep: 30S ribosomal protein S3P
- Thermofilum pendens (strain Hrk 5)
Length = 202
Score = 115 bits (276), Expect = 1e-24
Identities = 65/183 (35%), Positives = 100/183 (54%)
Frame = +1
Query: 58 RKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRXIRE 237
RK + G+ LNE+L R+L Y + TPI +++I+ A V+G KG I+
Sbjct: 6 RKVISQGLQYMMLNEYLQRQLVRANYVHAQFFKTPIGTKVIVYAGVPGLVIGRKGANIKA 65
Query: 238 LTSVVQKRFNIPEQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME 417
+ V+++ F I + + +V + L A A + L+ G+ RRA L IM
Sbjct: 66 IAEVLEREFGIENPQIDVV--EVPNQDLNAKIMAYRVARALVRGVRFRRAALVALNRIMA 123
Query: 418 SGARGCEVVVSGKLRGQRAKSMKFVHGLMIHSGDPCNDYVNTATRHVLLRQGVLXIKVKI 597
+GARG E+V+SGKL QR ++ KF G + SG+P + V+ A HVLL+ G+ +KV+I
Sbjct: 124 AGARGAEIVISGKLTSQRHRTEKFTRGYVPKSGEPGEELVDEAIVHVLLKLGMYGVKVRI 183
Query: 598 MLP 606
M P
Sbjct: 184 MKP 186
>UniRef50_UPI00015BB204 Cluster: SSU ribosomal protein S3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: SSU ribosomal protein
S3P - Ignicoccus hospitalis KIN4/I
Length = 241
Score = 114 bits (275), Expect = 1e-24
Identities = 68/189 (35%), Positives = 109/189 (57%)
Frame = +1
Query: 31 MAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVL 210
M+V + K+ F+ + + +++E+L + GYS VE++ TP+ + +II A R+ +++
Sbjct: 1 MSVAKKNIKKYFLEQALTQVKVDEYLAYKFHSVGYSKVELQKTPMGTRVIIYAERSGAII 60
Query: 211 GEKGRXIRELTSVVQKRFNIPEQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRAC 390
G +G+ I+++T V+++ F IP V + KV L A A L L G RRA
Sbjct: 61 GRRGQTIKQITKVLEEWFGIPNPQVTVV--KVEEPELDARVMAFRLANALQRGFHFRRAA 118
Query: 391 YGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVHGLMIHSGDPCNDYVNTATRHVLLRQ 570
Y LR IM +GA G +V VSGKLRG+RA+ K++ G + SG+ + A HVLL+
Sbjct: 119 YTTLRRIMGAGAIGAQVKVSGKLRGERARFEKYIAGKVYKSGNQVVRLTDRAIAHVLLKV 178
Query: 571 GVLXIKVKI 597
GV ++V I
Sbjct: 179 GVEGVEVII 187
>UniRef50_O26116 Cluster: 30S ribosomal protein S3P; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S3P -
Methanobacterium thermoautotrophicum
Length = 258
Score = 114 bits (275), Expect = 1e-24
Identities = 60/184 (32%), Positives = 104/184 (56%)
Frame = +1
Query: 55 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRXIR 234
++ FV +G+ + ++E+L +EL GY G++V+VTP+ + +++ A R V+G G+ +R
Sbjct: 3 EKDFVVEGLRRTRIDEYLEKELERAGYGGMDVQVTPMGTMVVVYAERPGMVIGRGGKTVR 62
Query: 235 ELTSVVQKRFNIPEQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 414
+T ++ +F++ V + ++V L A + L G+ RR Y +R IM
Sbjct: 63 AITQKLKNKFDLENPQVEV--KEVDVPELNPKIMAHKIAAMLQRGMHFRRVAYTTMRRIM 120
Query: 415 ESGARGCEVVVSGKLRGQRAKSMKFVHGLMIHSGDPCNDYVNTATRHVLLRQGVLXIKVK 594
+GA+G EV +SGK+RG R+ + KF G + G+P +V V L+ GVL + V+
Sbjct: 121 AAGAQGVEVTISGKIRGARSATAKFTDGYIKKCGEPSVKHVREGFATVQLKPGVLGVYVR 180
Query: 595 IMLP 606
IM P
Sbjct: 181 IMPP 184
>UniRef50_Q6LXE7 Cluster: 30S ribosomal protein S3P; n=5;
Methanococcus|Rep: 30S ribosomal protein S3P -
Methanococcus maripaludis
Length = 211
Score = 114 bits (275), Expect = 1e-24
Identities = 56/184 (30%), Positives = 102/184 (55%)
Frame = +1
Query: 55 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRXIR 234
+R FVG+ V + ++E+ +L GYS ++ + TPI + I + A + V+G KG+ ++
Sbjct: 3 ERTFVGENVSETLIDEYFKTKLVRAGYSHIDFKKTPIGTRITVFAEKPGFVIGRKGKMVK 62
Query: 235 ELTSVVQKRFNIPEQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 414
ELT + +++ + + ++V L + L G+ R+ + +R +M
Sbjct: 63 ELTETLATEYSVKNPQIEV--KQVENPDLDPAVVGHKIASSLERGMHFRKTAHSAIRRVM 120
Query: 415 ESGARGCEVVVSGKLRGQRAKSMKFVHGLMIHSGDPCNDYVNTATRHVLLRQGVLXIKVK 594
SGA+G ++VSGKL G+R+++ KF+ G M H G+P VN + + L+ G++ + VK
Sbjct: 121 GSGAKGVAIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKSHQLAKLKLGIVGVTVK 180
Query: 595 IMLP 606
IM P
Sbjct: 181 IMRP 184
>UniRef50_O28360 Cluster: 30S ribosomal protein S3P; n=1;
Archaeoglobus fulgidus|Rep: 30S ribosomal protein S3P -
Archaeoglobus fulgidus
Length = 229
Score = 108 bits (260), Expect = 1e-22
Identities = 64/184 (34%), Positives = 101/184 (54%)
Frame = +1
Query: 55 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRXIR 234
+RKFV + + K + E++ E+ G+ GV++ TP+ +++ + R V+G+ GR I+
Sbjct: 4 ERKFVQERLKKLMVKEWIKDEVRSAGFGGVDILRTPLGTQVTLFVERPGLVIGKGGRRIK 63
Query: 235 ELTSVVQKRFNIPEQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 414
LT + K F I V + ++V A A L L G RRA Y L IM
Sbjct: 64 ALTEKL-KDFGIENPQVSV--DEVEKPEFNAQLMASLLARALERGWYFRRAGYRFLYRIM 120
Query: 415 ESGARGCEVVVSGKLRGQRAKSMKFVHGLMIHSGDPCNDYVNTATRHVLLRQGVLXIKVK 594
E+GA+GCE+ +SGKL +RA++ KFV G ++H+GDP V + + GVL + V+
Sbjct: 121 EAGAKGCEIEISGKLVSERARTEKFVAGTIVHTGDPAESMVQKGFDIAIKKLGVLGVSVR 180
Query: 595 IMLP 606
I+ P
Sbjct: 181 IIPP 184
>UniRef50_Q9UXA0 Cluster: 30S ribosomal protein S3P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S3P - Sulfolobus
solfataricus
Length = 229
Score = 103 bits (247), Expect = 4e-21
Identities = 58/184 (31%), Positives = 95/184 (51%)
Frame = +1
Query: 55 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRXIR 234
KR F+ + K +++E+L ++ Y+GVEV TPI + +II A R ++G GR I+
Sbjct: 5 KRYFLEKSIVKVKIDEYLAKQYYNAEYAGVEVLKTPIGTRVIIYAGRPSMIIGRGGRNIK 64
Query: 235 ELTSVVQKRFNIPEQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 414
+L + +K F + + + V L A A L L G RRA + +R IM
Sbjct: 65 QLAQIFEKVFGLENPQITI--TNVENPELNARVMAFRLAIALEKGYHFRRAAFISMRRIM 122
Query: 415 ESGARGCEVVVSGKLRGQRAKSMKFVHGLMIHSGDPCNDYVNTATRHVLLRQGVLXIKVK 594
+GA G E+++SGKL +RA+ K G++ SG ++ A +L+ G+ ++V
Sbjct: 123 NAGALGAEIIISGKLTTERARYEKLKEGIVYKSGQQLEKMIDRAIAIAMLKPGIFGVEVV 182
Query: 595 IMLP 606
I P
Sbjct: 183 ITKP 186
>UniRef50_Q4JB46 Cluster: 30S ribosomal protein S3P; n=3;
Sulfolobaceae|Rep: 30S ribosomal protein S3P -
Sulfolobus acidocaldarius
Length = 231
Score = 103 bits (247), Expect = 4e-21
Identities = 62/184 (33%), Positives = 95/184 (51%)
Frame = +1
Query: 55 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRXIR 234
KR F+ K ++E+L ++ Y+GVE+ TPI + +II A R ++G+ G+ I+
Sbjct: 5 KRHFLQKAAIKVMVDEYLAKQFYNAEYAGVEIVKTPIGTRVIIYAGRPPLIIGKGGKTIK 64
Query: 235 ELTSVVQKRFNIPEQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 414
+L V++K F + + + A + L A A L L G RRA + +R IM
Sbjct: 65 QLAQVLEKFFGLENPQITVTAAE--NPELNARVMAFRLAIALEKGYHFRRAAFITIRRIM 122
Query: 415 ESGARGCEVVVSGKLRGQRAKSMKFVHGLMIHSGDPCNDYVNTATRHVLLRQGVLXIKVK 594
SGA G EV+VSGKL +RAK K G + SG ++ A +L+ GV ++V
Sbjct: 123 SSGAVGAEVIVSGKLTSERAKYEKLKEGTVYKSGQQLEKIIDRAIGIAMLKPGVYGVEVV 182
Query: 595 IMLP 606
I P
Sbjct: 183 ITKP 186
>UniRef50_A3DNB3 Cluster: 30S ribosomal protein S3P; n=1;
Staphylothermus marinus F1|Rep: 30S ribosomal protein
S3P - Staphylothermus marinus (strain ATCC 43588 / DSM
3639 / F1)
Length = 224
Score = 95.9 bits (228), Expect = 7e-19
Identities = 58/184 (31%), Positives = 96/184 (52%)
Frame = +1
Query: 55 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRXIR 234
K F+ + K L+EFL + GY+G+E+ TP ++I A ++G G IR
Sbjct: 7 KSYFIDYSLKKVMLDEFLANYFKDAGYAGMELYKTPTGYRVVIYAEYPGRIIGRGGSIIR 66
Query: 235 ELTSVVQKRFNIPEQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 414
+L +++Q F + ++V + V L A A + L + RR +LR +M
Sbjct: 67 KLMTIMQTHFGL--ENVNITVSPVPDPDLNARIVAFRIVRALEKEIPYRRVAMAMLRRVM 124
Query: 415 ESGARGCEVVVSGKLRGQRAKSMKFVHGLMIHSGDPCNDYVNTATRHVLLRQGVLXIKVK 594
E+GA G E+++SGKLR +RA+ K G + +GD + V+ A LL++GV ++V
Sbjct: 125 EAGAVGAEIIISGKLRSERARYEKLKAGRIYKAGDMVDYVVDRAVGKALLKRGVYGVEVV 184
Query: 595 IMLP 606
I+ P
Sbjct: 185 IVRP 188
>UniRef50_Q8ZWI0 Cluster: 30S ribosomal protein S3P; n=6;
Pyrobaculum|Rep: 30S ribosomal protein S3P - Pyrobaculum
aerophilum
Length = 218
Score = 95.5 bits (227), Expect = 1e-18
Identities = 52/181 (28%), Positives = 95/181 (52%), Gaps = 1/181 (0%)
Frame = +1
Query: 58 RKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRXIRE 237
+K + + K + EFL L++ GY E+ TP+ + I+I A R ++G KG ++E
Sbjct: 12 KKILEENKKKWMIKEFLEYRLSKYGYIDSEILKTPLGTRIVIYAERPSRIIGRKGAIVKE 71
Query: 238 LTSVVQKRFNIPEQSVXLY-AEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 414
+++++ + + + + K+ + A + + G+ RR + +R +M
Sbjct: 72 ISNILTTKLGVENPQIDVIDISKIEAPEMFPKVVAYRIANAMAKGVRFRRVMFVAIRQLM 131
Query: 415 ESGARGCEVVVSGKLRGQRAKSMKFVHGLMIHSGDPCNDYVNTATRHVLLRQGVLXIKVK 594
E+GA+G E+VVSGKL +RA+ K +G + G + V A HVLL+ G+ I+V+
Sbjct: 132 EAGAKGFEIVVSGKLSTERARFEKQTYGKLYKIGYDAKNRVRRAVVHVLLKPGIYGIEVR 191
Query: 595 I 597
I
Sbjct: 192 I 192
>UniRef50_UPI00005A35DE Cluster: PREDICTED: similar to 40S ribosomal
protein S3; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to 40S ribosomal protein S3 - Canis familiaris
Length = 161
Score = 94.3 bits (224), Expect = 2e-18
Identities = 45/57 (78%), Positives = 51/57 (89%)
Frame = +1
Query: 49 SKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEK 219
SKKR+FV DG+F+AELNEFLTRELAEDG S VEVRVTP + EIII+ TRTQ+VLGEK
Sbjct: 6 SKKRQFVADGIFRAELNEFLTRELAEDGDSRVEVRVTPTKPEIIILTTRTQNVLGEK 62
Score = 82.2 bits (194), Expect = 9e-15
Identities = 41/69 (59%), Positives = 48/69 (69%)
Frame = +1
Query: 409 IMESGARGCEVVVSGKLRGQRAKSMKFVHGLMIHSGDPCNDYVNTATRHVLLRQGVLXIK 588
+ ESGA+G E +VSGKL+GQRAKS KFV MIHS D N YV+T+ HVLLRQGVL K
Sbjct: 80 VQESGAKGYEAMVSGKLQGQRAKSAKFVDDSMIHSRDCVNHYVDTSVHHVLLRQGVLGSK 139
Query: 589 VKIMLPWDQ 615
+ P Q
Sbjct: 140 CRSCFPGTQ 148
>UniRef50_Q9HIR5 Cluster: 30S ribosomal protein S3P; n=4;
Thermoplasmatales|Rep: 30S ribosomal protein S3P -
Thermoplasma acidophilum
Length = 225
Score = 91.9 bits (218), Expect = 1e-17
Identities = 49/185 (26%), Positives = 100/185 (54%)
Frame = +1
Query: 52 KKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRXI 231
K+RKF+ + V + + E++ +E G+ + ++ TP + I + R V+G +G +
Sbjct: 2 KERKFINEAVKRLLVCEYVVKETENAGFGNMVMKRTPFGTNITLYVNRPGLVIGRRGSKV 61
Query: 232 RELTSVVQKRFNIPEQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFI 411
+++T ++K++ I + + + V L A+ + L G + R+A L
Sbjct: 62 QQMTDTLEKKYGIETPQIEV--KDVKDPDLNPSVIAKKIALSLEKGWSYRKAGNTSLNRT 119
Query: 412 MESGARGCEVVVSGKLRGQRAKSMKFVHGLMIHSGDPCNDYVNTATRHVLLRQGVLXIKV 591
+++GA+G + +SGK+ G+RA+ KF++G + +SG+P + + T L+ G+L + V
Sbjct: 120 IQAGAKGVLIKISGKISGERARYQKFIYGNVKYSGEPGSKGMITGFSTAKLKVGILGVTV 179
Query: 592 KIMLP 606
KI+ P
Sbjct: 180 KILNP 184
>UniRef50_A5DF25 Cluster: Putative uncharacterized protein; n=1;
Pichia guilliermondii|Rep: Putative uncharacterized
protein - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 278
Score = 89.8 bits (213), Expect = 5e-17
Identities = 51/183 (27%), Positives = 94/183 (51%)
Frame = -3
Query: 600 HDFDLDS*YSLPEKHMSGSSVDVIIARVSRVDHESMYKLH*FGTLTTQLARYNNFTTTGT 421
H+ D D+ +L +H+S +V+ ++ ++RVDHE++ L G+ ++Q +N T T
Sbjct: 82 HNLDSDTQNTLSHQHVSDGNVNKVVGWLTRVDHETVRVLLRLGSSSSQFTGDDNLHTLST 141
Query: 420 RFHDETENTIASTTYSETSDKLVS*RFGLGDSAKTTSSHLFSIQXYRLLWNVESLLYYGS 241
H ++++T+ +++ +T +L FGL S +T+ + +ESL G
Sbjct: 142 SSHGKSQHTVGGSSHWQTVQQLGFQGFGLDSSGQTSLLDSLGVDDNSFRRQLESLDNQGG 201
Query: 240 QLTDXASFLSEHTLCPGGHNNDLRADGSDPHFHAGVAVLGQLPSEELIEFRLENPISNKF 61
QL D S S++TL G +N+L+ + GV + Q EE ++ +E+ IS +
Sbjct: 202 QLVDSTSLFSQNTLGVGSLDNNLQLGWGLSDLNTGVTLFSQFSGEEFVQLGVEDTISYQL 261
Query: 60 SLL 52
S L
Sbjct: 262 SFL 264
>UniRef50_A0RVX9 Cluster: 30S ribosomal protein S3P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S3P -
Cenarchaeum symbiosum
Length = 261
Score = 86.6 bits (205), Expect = 4e-16
Identities = 54/170 (31%), Positives = 87/170 (51%), Gaps = 1/170 (0%)
Frame = +1
Query: 91 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRXIRELTSVVQKRFNI 270
+L EFL + + G+SGVEV P ++I + TR V+G KG IRELT ++K F++
Sbjct: 16 KLREFLRENIKDSGFSGVEVEKNPRGTKITLHVTRPGIVIGRKGVGIRELTERLEKDFDL 75
Query: 271 PEQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME-SGARGCEVVV 447
V + +++ T L + + G A RRA ++ IME A G ++ +
Sbjct: 76 KSPQVDV--KEIETPELYPGVMCNRMASHIERGTAFRRATMWTIQQIMEKKDAMGVQITI 133
Query: 448 SGKLRGQRAKSMKFVHGLMIHSGDPCNDYVNTATRHVLLRQGVLXIKVKI 597
SGKLRG R+ K G++ +G + V HV G++ I+++I
Sbjct: 134 SGKLRGDRSAFEKHTSGILPRAGHYADVIVLDDVVHVKTPMGLIGIRIRI 183
>UniRef50_A3H696 Cluster: Ribosomal protein S3-like; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S3-like -
Caldivirga maquilingensis IC-167
Length = 226
Score = 86.2 bits (204), Expect = 6e-16
Identities = 45/183 (24%), Positives = 94/183 (51%)
Frame = +1
Query: 58 RKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRXIRE 237
++ + D K + E+L L + Y ++ T + + I+I+A + ++G KG+ ++
Sbjct: 3 KRIIDDNKKKWMIKEYLNIALTRNRYVDSIIQRTTLGTRIVIIAEKKNRIIGRKGQQVKA 62
Query: 238 LTSVVQKRFNIPEQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME 417
L +++ +FN+ + + E +A + + G+ RRA LR + E
Sbjct: 63 LADILKSKFNLDNVVIDVIQEPHPEYNARLVALR--IADAMAKGIRFRRAAIIALRQLQE 120
Query: 418 SGARGCEVVVSGKLRGQRAKSMKFVHGLMIHSGDPCNDYVNTATRHVLLRQGVLXIKVKI 597
+ +G EV++SGKL +R++ K+ G++I +G + V A VLL+ G+ ++V++
Sbjct: 121 ANVQGAEVIISGKLTTERSRFEKYTTGIVIKAGQDALEKVQEAVIPVLLKPGIFSVRVRV 180
Query: 598 MLP 606
+ P
Sbjct: 181 LPP 183
>UniRef50_Q673S3 Cluster: Ribosomal protein S3; n=2; environmental
samples|Rep: Ribosomal protein S3 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 307
Score = 85.0 bits (201), Expect = 1e-15
Identities = 51/183 (27%), Positives = 90/183 (49%)
Frame = +1
Query: 58 RKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRXIRE 237
R F+ V + + E+L RE G+ G+E TP +++ + A + V+G +G+ I E
Sbjct: 9 RTFINRNVERHMVREYLLRETERAGFGGLEFNRTPEGTKVTLSAEQVGRVIGRRGKVIHE 68
Query: 238 LTSVVQKRFNIPEQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME 417
L ++ F + ++ L ++ L A A L L G RRA + + IM+
Sbjct: 69 LQYRLKSDFKL--ENPRLEVNEIEEPRLNAQVMASRLASSLERGWFFRRAGHSTAQNIMD 126
Query: 418 SGARGCEVVVSGKLRGQRAKSMKFVHGLMIHSGDPCNDYVNTATRHVLLRQGVLXIKVKI 597
+GARGC +++SGK+ G R + KF G + G+ +++ + + G + V+I
Sbjct: 127 AGARGCLIILSGKISGPRHRVQKFQQGHIKFCGETALQFMDEGFSTAVKKLGTVGCTVRI 186
Query: 598 MLP 606
M P
Sbjct: 187 MRP 189
>UniRef50_Q8LNX7 Cluster: Putative ribosomal protein S3; n=1; Zinnia
elegans|Rep: Putative ribosomal protein S3 - Zinnia
elegans (Zinnia)
Length = 143
Score = 83.0 bits (196), Expect = 5e-15
Identities = 38/56 (67%), Positives = 43/56 (76%)
Frame = +1
Query: 466 QRAKSMKFVHGLMIHSGDPCNDYVNTATRHVLLRQGVLXIKVKIMLPWDQQGKNGP 633
QRAKSMKF G M+ SG P +Y+++A RHVLLRQGVL IKVKIML WD GK GP
Sbjct: 2 QRAKSMKFKDGYMVSSGQPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPTGKLGP 57
>UniRef50_A7NXL5 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr5 scaffold_2, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 149
Score = 66.9 bits (156), Expect = 4e-10
Identities = 32/45 (71%), Positives = 38/45 (84%)
Frame = +1
Query: 115 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRXIRELTSV 249
+++EDGYSGV+VRVTP+R EIII ATRTQ+ LGEK R IREL V
Sbjct: 16 DISEDGYSGVQVRVTPMRMEIIIHATRTQNALGEKRRRIRELILV 60
>UniRef50_A6R2L3 Cluster: Predicted protein; n=1; Ajellomyces
capsulatus NAm1|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 151
Score = 64.9 bits (151), Expect = 2e-09
Identities = 32/46 (69%), Positives = 37/46 (80%)
Frame = +1
Query: 43 NISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEII 180
+ISK+RKFV GVF A LN F RELAE+GYSGVEVRVTP ++II
Sbjct: 84 DISKRRKFVVGGVFYAGLNGFFLRELAEEGYSGVEVRVTPTGTDII 129
>UniRef50_A5ATU8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 286
Score = 64.1 bits (149), Expect = 3e-09
Identities = 30/46 (65%), Positives = 37/46 (80%)
Frame = +1
Query: 115 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRXIRELTSVV 252
++ EDGYS V+VRVTP+ EII+ ATRTQ+ L EKGR IRELT V+
Sbjct: 139 DILEDGYSNVKVRVTPMGMEIIVRATRTQNALSEKGRRIRELTLVM 184
>UniRef50_A7QEK7 Cluster: Chromosome chr17 scaffold_85, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr17 scaffold_85, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 514
Score = 63.7 bits (148), Expect = 4e-09
Identities = 31/45 (68%), Positives = 36/45 (80%)
Frame = +1
Query: 115 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRXIRELTSV 249
++ EDGYS V+VRVTP+ EIII ATRTQ+ L EKGR IRELT V
Sbjct: 406 DILEDGYSDVKVRVTPMGMEIIIRATRTQNALSEKGRRIRELTLV 450
Score = 42.7 bits (96), Expect = 0.007
Identities = 19/32 (59%), Positives = 26/32 (81%)
Frame = +1
Query: 115 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVL 210
++ EDGYS ++V+VT +R EIII ATRTQ+ L
Sbjct: 281 DIPEDGYSDIKVKVTGMRMEIIIHATRTQNAL 312
>UniRef50_Q74MZ4 Cluster: 30S ribosomal protein S3P; n=2;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S3P -
Nanoarchaeum equitans
Length = 230
Score = 63.7 bits (148), Expect = 4e-09
Identities = 51/184 (27%), Positives = 86/184 (46%), Gaps = 1/184 (0%)
Frame = +1
Query: 58 RKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRXIRE 237
RKF+ + EF+ L S V +R TPI + +II + R + + E+ + +
Sbjct: 7 RKFIQNAKLTVFSQEFIRLYLRGANVSKVIIRQTPIVNRVIIYSARPKMISEERKAHLAK 66
Query: 238 LTSVVQKRFNIPEQSVXLYAEKVATRGLCAIAQAESLRYKLIGGL-AVRRACYGVLRFIM 414
L ++ +F + + + + + L A AE L + + A RR L IM
Sbjct: 67 L---LELKFGLEKPVIEVLP--IENPNLDAHVIAERLAMGIERNIRAYRRLAQRYLETIM 121
Query: 415 ESGARGCEVVVSGKLRGQRAKSMKFVHGLMIHSGDPCNDYVNTATRHVLLRQGVLXIKVK 594
+GA G E+V++G+L GQR K+ +F G + +G ++ A L+ GV I V
Sbjct: 122 NAGAIGAEIVIAGRLSGQRGKTWRFKAGNLRKTGTIGQFELDRAFNIAYLKPGVAGIHVT 181
Query: 595 IMLP 606
I+ P
Sbjct: 182 ILKP 185
>UniRef50_Q3LWD3 Cluster: Ribosomal protein S3; n=1; Bigelowiella
natans|Rep: Ribosomal protein S3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 262
Score = 63.3 bits (147), Expect = 5e-09
Identities = 28/74 (37%), Positives = 46/74 (62%)
Frame = +1
Query: 379 RRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVHGLMIHSGDPCNDYVNTATRHV 558
R + LRF++ SG RGC + + G R +R K+ KF GL+ HSG ND++++ + ++
Sbjct: 158 RSIIFNTLRFLINSGVRGCMIKLKGVYRSKRTKTFKFRRGLISHSGIQNNDWIDSDSFYL 217
Query: 559 LLRQGVLXIKVKIM 600
++G L I +KIM
Sbjct: 218 NKKRGTLGINIKIM 231
>UniRef50_Q9RXJ6 Cluster: 30S ribosomal protein S3; n=2;
Deinococcus|Rep: 30S ribosomal protein S3 - Deinococcus
radiodurans
Length = 249
Score = 60.9 bits (141), Expect = 3e-08
Identities = 44/171 (25%), Positives = 87/171 (50%), Gaps = 2/171 (1%)
Frame = +1
Query: 91 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRXIRELTSVVQKRFNI 270
++ + + ++LA G + +E+ + +II A + V+G+ G I+EL +++ +
Sbjct: 38 QIRQLINKKLAAAGIARIEIERAGQQVNVIISAAKPGVVIGKGGESIKELRGDIERL--V 95
Query: 271 PEQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 450
+V + ++ + A A + ++ A RRA + +MESGARG +V++S
Sbjct: 96 SAGTVAVNVAEIPNPNISAPLVALRIAEQIERRFAFRRAMKQAAQRVMESGARGVKVILS 155
Query: 451 GKLRG-QRAKSMKFVHG-LMIHSGDPCNDYVNTATRHVLLRQGVLXIKVKI 597
G+L G ++A++ K + G + +H+ DY R G+L IKV +
Sbjct: 156 GRLGGAEQARTEKVLEGRVPLHTLRADIDYGTALAR---TTYGILGIKVLV 203
>UniRef50_Q7MTL9 Cluster: 30S ribosomal protein S3; n=19;
Bacteroidetes|Rep: 30S ribosomal protein S3 -
Porphyromonas gingivalis (Bacteroides gingivalis)
Length = 246
Score = 52.4 bits (120), Expect = 9e-06
Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 2/172 (1%)
Frame = +1
Query: 88 AELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRXIRELTSVVQKRFN 267
+ + ++L LA+ S + + I I R ++G+ G+ + +L +++
Sbjct: 36 SRIRQYLNARLAKASVSRIVIERALKLVTITICTARPGMIIGKAGQEVDKLKEELKR--- 92
Query: 268 IPEQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVV 447
I ++ V + ++ L A AE++ +L G +A RRA + M GA G ++ V
Sbjct: 93 ITKKDVQINIYEIRKPELDAAIVAENIARQLEGKIAYRRAVKMAIASAMRMGAEGIKIQV 152
Query: 448 SGKLRG-QRAKSMKFVHG-LMIHSGDPCNDYVNTATRHVLLRQGVLXIKVKI 597
SG+L G + A+S F G +H+ DY A L + G+L IKV I
Sbjct: 153 SGRLNGAEMARSEMFKEGRTPLHTLRADIDY---ALAEALTKVGLLGIKVWI 201
>UniRef50_A5B260 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 414
Score = 52.0 bits (119), Expect = 1e-05
Identities = 25/47 (53%), Positives = 35/47 (74%)
Frame = +1
Query: 115 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRXIRELTSVVQ 255
++ EDGYS ++V+VT + EIII AT+TQ+ L E GR +RELT V +
Sbjct: 238 DIPEDGYSDIKVKVTGMCMEIIIRATQTQNALIENGRKMRELTLVTR 284
>UniRef50_Q6KI49 Cluster: 30S ribosomal protein S3; n=9;
Mycoplasma|Rep: 30S ribosomal protein S3 - Mycoplasma
mobile
Length = 225
Score = 51.2 bits (117), Expect = 2e-05
Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Frame = +1
Query: 175 IIIMATRTQSVLGEKGRXIRELTSVVQKRFNIPEQSVXLYAEKVATRGLCAIAQAESLRY 354
+++ + + ++LG+ G I +LT +QK E + + + L AI AE +
Sbjct: 67 VLVHSAKPGAILGQNGENINKLTQDIQKLLRNKELKLNIEVVNIKNPDLNAIILAEQIAI 126
Query: 355 KLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVHGLM 504
KL R A +R M+SGA+G + VSG+L G A+S + G M
Sbjct: 127 KLENRAPFRVAQKFAIRNAMKSGAKGIKTQVSGRLNGVDMARSEGYSEGEM 177
>UniRef50_A6EHQ8 Cluster: 30S ribosomal protein S3; n=1; Pedobacter
sp. BAL39|Rep: 30S ribosomal protein S3 - Pedobacter sp.
BAL39
Length = 281
Score = 49.2 bits (112), Expect = 8e-05
Identities = 40/171 (23%), Positives = 83/171 (48%), Gaps = 2/171 (1%)
Frame = +1
Query: 91 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRXIRELTSVVQKRFNI 270
++ ++L+ +A+ G + V + T R + I R V+G+ G+ + ++ ++K +
Sbjct: 37 KIRKYLSARIAKGGVAKVVIERTLKRITVTIHTARPGIVIGKAGQEVDKIKEELKK---L 93
Query: 271 PEQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 450
++ + + ++ L A AE + +L ++ RRA + M GA G +++ S
Sbjct: 94 TKKEIQINIFEIKRPELDAQLVAEGVAKQLEARISFRRAMKSTIAATMRMGAEGIKIMTS 153
Query: 451 GKLRG-QRAKSMKFVHG-LMIHSGDPCNDYVNTATRHVLLRQGVLXIKVKI 597
G+L G + A+S ++ G + +H+ DY A L G + +KV I
Sbjct: 154 GRLGGAEMARSEQYKEGRIPLHTFRADIDY---ALAEALTTYGKIGVKVWI 201
>UniRef50_Q12GW5 Cluster: 30S ribosomal protein S3; n=197;
Bacteria|Rep: 30S ribosomal protein S3 - Polaromonas sp.
(strain JS666 / ATCC BAA-500)
Length = 301
Score = 48.8 bits (111), Expect = 1e-04
Identities = 36/139 (25%), Positives = 63/139 (45%)
Frame = +1
Query: 49 SKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRX 228
+ R F G ++ E+L +L S V + + I I + R V+G+KG
Sbjct: 24 ASNRDFAGMLAEDIKVREYLKAKLKNAAVSRVLIERPAKNARITIFSARPGVVIGKKGED 83
Query: 229 IRELTSVVQKRFNIPEQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRF 408
I L + ++ +P V + E+V + A A+S+ +L + RRA ++
Sbjct: 84 IENLKKELSRQLGVP---VAVNIEEVRKPEIDAKLIADSITQQLEKRIMFRRAMKRAMQN 140
Query: 409 IMESGARGCEVVVSGKLRG 465
M GA G +++ SG+L G
Sbjct: 141 AMRLGALGIKIMSSGRLNG 159
>UniRef50_O83225 Cluster: 30S ribosomal protein S3; n=1; Treponema
pallidum|Rep: 30S ribosomal protein S3 - Treponema
pallidum
Length = 247
Score = 48.0 bits (109), Expect = 2e-04
Identities = 40/158 (25%), Positives = 74/158 (46%), Gaps = 9/158 (5%)
Frame = +1
Query: 19 PVAI-MAVNNISKKRKFVGDGVFKAELNEFLT--------RELAEDGYSGVEVRVTPIRS 171
P+ + + +N + R + G + A L+E L E + VE+ P R
Sbjct: 7 PIGLRLGINKVWSSRWYAGPREYAALLHEDLRIRSMIRSFPECKNADIAEVEIVRHPQRV 66
Query: 172 EIIIMATRTQSVLGEKGRXIRELTSVVQKRFNIPEQSVXLYAEKVATRGLCAIAQAESLR 351
+++ R V+G KG I ++ + VQKR N + V + +++ L A A+++
Sbjct: 67 TVVMHTARPGVVIGAKGVNIEKIGAEVQKRLN---KKVQIKVKEIKRMELNAYLVAQNVA 123
Query: 352 YKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG 465
+L ++ R+ M+SGA+G ++ VSG+L G
Sbjct: 124 RQLTARVSFRKCLRQACAGTMKSGAQGVKIRVSGRLGG 161
>UniRef50_Q7UN14 Cluster: 30S ribosomal protein S3; n=3;
Planctomycetaceae|Rep: 30S ribosomal protein S3 -
Rhodopirellula baltica
Length = 236
Score = 48.0 bits (109), Expect = 2e-04
Identities = 37/144 (25%), Positives = 73/144 (50%), Gaps = 5/144 (3%)
Frame = +1
Query: 49 SKKRKFVGDGVFKAELNEFLTRELAEDGY--SGVE-VRVTPIRSEIIIM--ATRTQSVLG 213
+ K+ F V ++ EF+T+ + Y +G++ + + R E+ +M R ++G
Sbjct: 24 ASKQDFADLLVEDRKIREFITKHPKKSQYKSAGIDRIEIERTRDEVRVMLYVARPGLIIG 83
Query: 214 EKGRXIRELTSVVQKRFNIPEQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACY 393
+KG+ I L + +Q N+ + + L E+V L A AE + +L + RR
Sbjct: 84 KKGQEIEILQAELQ---NLVGRRINLKVEEVGRPELQAQLVAEDISQQLAKRSSFRRTMK 140
Query: 394 GVLRFIMESGARGCEVVVSGKLRG 465
+L M++GA+G ++ ++G+L G
Sbjct: 141 RMLEQTMDAGAKGIKIQMAGRLGG 164
>UniRef50_A1KB21 Cluster: 30S ribosomal protein S3; n=67; cellular
organisms|Rep: 30S ribosomal protein S3 - Azoarcus sp.
(strain BH72)
Length = 260
Score = 46.8 bits (106), Expect = 4e-04
Identities = 32/125 (25%), Positives = 60/125 (48%)
Frame = +1
Query: 91 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRXIRELTSVVQKRFNI 270
++ ++L + LA V + + + + + R V+G+KG I L +QK +
Sbjct: 38 KVRDYLKKRLAHASVGRVVIERPAKNARVTLFSARPGVVIGKKGEDIEALKRDLQKIVGV 97
Query: 271 PEQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 450
P V + E+V + A A+S+ +L + RRA ++ M GA+G +++ S
Sbjct: 98 P---VHVNIEEVRKPEIDAKLIADSIAQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSS 154
Query: 451 GKLRG 465
G+L G
Sbjct: 155 GRLNG 159
>UniRef50_P46772 Cluster: 30S ribosomal protein S3; n=5;
Thermotogaceae|Rep: 30S ribosomal protein S3 -
Thermotoga maritima
Length = 209
Score = 46.0 bits (104), Expect = 8e-04
Identities = 46/172 (26%), Positives = 80/172 (46%), Gaps = 3/172 (1%)
Frame = +1
Query: 91 ELNEFLTRELAEDGYSGVEV-RVTPIRSEIIIMATRTQSVLGEKGRXIRELTSVVQKRFN 267
E+ + + + G S + V R R I + R ++G KG I L ++++FN
Sbjct: 37 EIRKIIKNKYYHAGISEIYVERPDAERINITVKTARPGIIIGRKGSEITSLREELERKFN 96
Query: 268 IPEQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVV 447
+ V + E++ T L A AES+ ++ + + A + M GA+G +V+V
Sbjct: 97 ---RRVVINIEEIKTPELDAQLVAESIASRIEKRASYKVAMKRAIMNAMRKGAQGIKVMV 153
Query: 448 SGKLRG-QRAKSMKFVHG-LMIHSGDPCNDYVNTATRHVLLRQGVLXIKVKI 597
+G+L G + A+ ++ G L + DY TAT + G + IKV I
Sbjct: 154 AGRLGGAEIARREWYLRGRLPLQKIKAIIDY-GTAT--AWTKYGTIGIKVWI 202
>UniRef50_Q8KAH8 Cluster: 30S ribosomal protein S3; n=10;
Chlorobiaceae|Rep: 30S ribosomal protein S3 - Chlorobium
tepidum
Length = 253
Score = 44.8 bits (101), Expect = 0.002
Identities = 46/179 (25%), Positives = 85/179 (47%), Gaps = 2/179 (1%)
Frame = +1
Query: 61 KFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRXIREL 240
K D V + ++ L +E A G + + + T +I I A R +++G KG I L
Sbjct: 32 KIKQDQVIRNYVHARLKKEKA--GIAKIVIERTTKHIKINIYAARPGAIVGHKGEEINNL 89
Query: 241 TSVVQKRFNIPEQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMES 420
+ Q+ I + V + +V + A E++ Y+L ++ RRA ++ M +
Sbjct: 90 S---QELTRITGKEVKIDVIEVIKPEIEAQLIGENIAYQLENRVSFRRAMKMAIQQAMRA 146
Query: 421 GARGCEVVVSGKLRG-QRAKSMKFVHG-LMIHSGDPCNDYVNTATRHVLLRQGVLXIKV 591
GA G + +G+L G + A++ ++ G + +H+ DY + T H + G + IKV
Sbjct: 147 GAEGVRIRCAGRLGGAEIARAEQYKEGKIPLHTLRANVDYA-SVTAHTI--AGAIGIKV 202
>UniRef50_A6NXD5 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 283
Score = 43.6 bits (98), Expect = 0.004
Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 1/144 (0%)
Frame = +1
Query: 67 VGDGVFK-AELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRXIRELT 243
VGD + + ++ +FL + G +E+ + I + R V+G+ G I L
Sbjct: 29 VGDLLVEDKKIRDFLKKTQYGAGIPKIEIERDNAKVRIYLHCARPGVVIGKGGEAIEALR 88
Query: 244 SVVQKRFNIPEQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESG 423
++K +SV L +V + A AE++ +L + RRA + M G
Sbjct: 89 LQLEKMLG---KSVALNIVEVKNPDMDAQLIAENIAQQLEKRIGFRRAMKNAMGRAMRMG 145
Query: 424 ARGCEVVVSGKLRGQRAKSMKFVH 495
ARG + VSG+L G + H
Sbjct: 146 ARGIKTQVSGRLGGAEIARTEHYH 169
>UniRef50_Q2JFH0 Cluster: 30S ribosomal protein S3; n=94;
Bacteria|Rep: 30S ribosomal protein S3 - Frankia sp.
(strain CcI3)
Length = 315
Score = 42.7 bits (96), Expect = 0.007
Identities = 34/144 (23%), Positives = 66/144 (45%)
Frame = +1
Query: 58 RKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRXIRE 237
+ +VG+ V ++ + ++R + G S V++ T R + I R V+G +G
Sbjct: 29 KAYVGEDV---KIRKMMSRGMERAGISRVDIERTQGRLRVDIHTARPGIVIGRRGAEADR 85
Query: 238 LTSVVQKRFNIPEQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME 417
+ ++K + + V L +V + A A+ + +L ++ RRA ++ M+
Sbjct: 86 IRGDLEK---LTGKQVQLNILEVKNPEVDAQLVAQGVAEQLSSRVSFRRAMRKAMQTAMK 142
Query: 418 SGARGCEVVVSGKLRGQRAKSMKF 489
GA+G V SG+L G +F
Sbjct: 143 GGAKGIRVQCSGRLGGAEMSRSEF 166
>UniRef50_UPI00015BD7E8 Cluster: UPI00015BD7E8 related cluster; n=1;
unknown|Rep: UPI00015BD7E8 UniRef100 entry - unknown
Length = 231
Score = 41.9 bits (94), Expect = 0.012
Identities = 39/170 (22%), Positives = 84/170 (49%), Gaps = 2/170 (1%)
Frame = +1
Query: 94 LNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRXIRELTSVVQKRFNIP 273
+ +++ G S V + + + + I++++ ++G KG + +L + +++ +
Sbjct: 39 IRKYIKERYKSAGISKVTIERSGEKIRVRILSSKPGIIIGRKGAEVDQLKNDLERI--VK 96
Query: 274 EQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 453
+ + L ++V L A AE + ++ ++ RRA + ++SGA+G +V V G
Sbjct: 97 NKDISLSVDEVRVPQLDAQLVAEDIALQIERRVSHRRAMKRAIDNAIKSGAKGIKVQVKG 156
Query: 454 KLRG-QRAKSMKFVHGLM-IHSGDPCNDYVNTATRHVLLRQGVLXIKVKI 597
++ G A++ F+ G M + + DY AT + + G+L IKV I
Sbjct: 157 RIGGADLARAEWFLVGRMPLQTLRADIDY-GYATAYT--KYGILGIKVWI 203
>UniRef50_Q6A6N2 Cluster: 30S ribosomal protein S3; n=27;
Bacteria|Rep: 30S ribosomal protein S3 -
Propionibacterium acnes
Length = 269
Score = 41.9 bits (94), Expect = 0.012
Identities = 34/135 (25%), Positives = 60/135 (44%)
Frame = +1
Query: 61 KFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRXIREL 240
+ VG+ V ++ E+L + L G S +E+ R I + A R V+G G +
Sbjct: 30 ELVGEDV---KIREWLHKNLERAGLSSIEIERRSERVTIFLYAARPGIVIGRNGAEAERV 86
Query: 241 TSVVQKRFNIPEQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMES 420
++K + + + L +V + A A+ + +L +A RRA + M +
Sbjct: 87 RGELEK---LTGKQIQLNILEVKSPETDAQLVAQGIAEQLAARVAFRRAMRKAQQSAMNA 143
Query: 421 GARGCEVVVSGKLRG 465
GA G + SG+L G
Sbjct: 144 GALGIRIKCSGRLGG 158
>UniRef50_P0A4C3 Cluster: 30S ribosomal protein S3; n=39;
Bacteria|Rep: 30S ribosomal protein S3 - Streptococcus
pneumoniae
Length = 217
Score = 41.1 bits (92), Expect = 0.022
Identities = 29/124 (23%), Positives = 59/124 (47%)
Frame = +1
Query: 94 LNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRXIRELTSVVQKRFNIP 273
+ +F+ +ELA+ S +E+ + + + + V+G+ G + L + + K +
Sbjct: 38 IRKFVQKELADAAVSTIEIERAVNKVNVSLHTAKPGMVIGKGGANVDALRAKLNK---LT 94
Query: 274 EQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 453
+ V + ++ L A E + +L +A RRA ++ M +GA+G + VSG
Sbjct: 95 GKQVHINIIEIKQPDLDAHLVGEGIARQLEQRVAFRRAQKQAIQRAMRAGAKGIKTQVSG 154
Query: 454 KLRG 465
+L G
Sbjct: 155 RLNG 158
>UniRef50_Q04G79 Cluster: 30S ribosomal protein S3; n=1; Oenococcus
oeni PSU-1|Rep: 30S ribosomal protein S3 - Oenococcus
oeni (strain BAA-331 / PSU-1)
Length = 267
Score = 39.9 bits (89), Expect = 0.050
Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 4/128 (3%)
Frame = +1
Query: 94 LNEFLTRELAEDGYSGVEV-RVTPIRSEIIIMATRTQSVLGEKGRXIRELTSVVQK---R 261
+ ++L L + + + R P R + I + V+G G + L S + K
Sbjct: 39 IRKYLETNLKDAAVDRITIERTEPTRINLTIHTAKPGIVIGRGGADVERLRSELSKIVDT 98
Query: 262 FNIPEQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEV 441
+ + V + ++ L A + + L +A RRA G ++ + +GA+G
Sbjct: 99 YKGQHKRVNINIVEIRKPDLNAHLVGQQIAADLERRVAFRRAMRGAIQRVQRAGAKGVRT 158
Query: 442 VVSGKLRG 465
+VSG+L G
Sbjct: 159 MVSGRLNG 166
>UniRef50_P46247 Cluster: 30S ribosomal protein S3; n=3;
Entomoplasmatales|Rep: 30S ribosomal protein S3 -
Mesoplasma florum (Acholeplasma florum)
Length = 241
Score = 39.5 bits (88), Expect = 0.066
Identities = 29/137 (21%), Positives = 62/137 (45%), Gaps = 1/137 (0%)
Frame = +1
Query: 91 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRXIRELTSVVQKRFNI 270
++ E + + L + S +++ T +II R VLG++G+ + + + VQK
Sbjct: 38 KIREGVLKLLKDAAVSKIKIERTNSNITLIIRTARPAIVLGQEGKNVSNIATAVQKIAKD 97
Query: 271 PEQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 450
V + +V A A + ++ + R +R +++G +G + VS
Sbjct: 98 RNLKVEVKVIEVKNPDADATLVARWIGEQITNRASFRTVQKLAIRKALKAGVKGIKTSVS 157
Query: 451 GKLRG-QRAKSMKFVHG 498
G+L G + A++ ++ G
Sbjct: 158 GRLGGVEMARTEGYIEG 174
>UniRef50_Q9PQQ4 Cluster: 30S ribosomal protein S3; n=1; Ureaplasma
parvum|Rep: 30S ribosomal protein S3 - Ureaplasma parvum
(Ureaplasma urealyticum biotype 1)
Length = 257
Score = 39.1 bits (87), Expect = 0.088
Identities = 37/171 (21%), Positives = 79/171 (46%), Gaps = 2/171 (1%)
Frame = +1
Query: 91 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRXIRELTSVVQKRFNI 270
++ ++L+ + G VE+ R + + A ++ ++G + + + + K
Sbjct: 39 KIRKYLSTKYKNAGIDHVEIERDQQRVNVYVYAVQSGLLIGTEASEKKLIELAINKIVG- 97
Query: 271 PEQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 450
+Q V L +V L A A + + ++ R A V++ ++++GARG + VS
Sbjct: 98 RKQLVSLKVVEVQIPELQASLMAREIADAIENRVSFRIAQKMVIKKVLKAGARGIKTHVS 157
Query: 451 GKLRG-QRAKSMKFVHGLM-IHSGDPCNDYVNTATRHVLLRQGVLXIKVKI 597
G+L G + A+ + G+M +H+ DY + + G++ +KV I
Sbjct: 158 GRLGGVEMAREEGYTQGVMTLHTLRADIDY---SMQEAHTTYGIIGVKVWI 205
>UniRef50_Q9XD30 Cluster: 30S ribosomal protein S3; n=4;
Leptospira|Rep: 30S ribosomal protein S3 - Leptospira
interrogans
Length = 225
Score = 39.1 bits (87), Expect = 0.088
Identities = 27/125 (21%), Positives = 53/125 (42%)
Frame = +1
Query: 91 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRXIRELTSVVQKRFNI 270
++ +F+ G V + P + + + + V+G+KG I + +++ +
Sbjct: 37 KIRKFVQNRFNNAGVVKVVIERFPEKINVNLHTAKPGIVIGQKGANIEAVKKILKTMTDK 96
Query: 271 PEQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 450
P + +K T C AES+ ++ RR LR M G G ++++S
Sbjct: 97 PVNLNIIEVKKPETVAQCI---AESIALQIEQRQPFRRVMKQELRRAMRGGVEGIKILIS 153
Query: 451 GKLRG 465
G+L G
Sbjct: 154 GRLNG 158
>UniRef50_Q3ZZL8 Cluster: 30S ribosomal protein S3; n=18;
Bacteria|Rep: 30S ribosomal protein S3 - Dehalococcoides
sp. (strain CBDB1)
Length = 278
Score = 38.7 bits (86), Expect = 0.12
Identities = 27/135 (20%), Positives = 64/135 (47%)
Frame = +1
Query: 91 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRXIRELTSVVQKRFNI 270
+L + ++++ + S V++ + + + R V+G G+ + E+ ++ ++
Sbjct: 38 KLRKAISKKYVDAAISQVDIERQSNKVTVSVRTARPGIVIGRGGQRVDEMRHFLE---DL 94
Query: 271 PEQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 450
+ V L +++ L A A S+ ++ +A RRA + M++GA+G ++ S
Sbjct: 95 IGKKVQLNIVEISQAELDAFLVARSVAEQIERRVAYRRAMKQAIFRSMQAGAKGIKICAS 154
Query: 451 GKLRGQRAKSMKFVH 495
G+L G + +H
Sbjct: 155 GRLGGVEIARREVMH 169
>UniRef50_Q2GED3 Cluster: 30S ribosomal protein S3; n=1;
Neorickettsia sennetsu str. Miyayama|Rep: 30S ribosomal
protein S3 - Neorickettsia sennetsu (strain Miyayama)
Length = 211
Score = 38.3 bits (85), Expect = 0.15
Identities = 41/172 (23%), Positives = 78/172 (45%), Gaps = 4/172 (2%)
Frame = +1
Query: 94 LNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRXIRELTSVVQKRFN-I 270
+ +++ A G S V ++ +I + + ++G+KG + + K+F +
Sbjct: 39 VTKYVESSFAHIGISKVIIKRKGASCDITLHCMKPGLIIGKKGADLESFRLKLNKKFGFV 98
Query: 271 PEQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM-ESGARGCEVVV 447
P +V +V A+ A+S+ ++L + RR + +M ES +G +V
Sbjct: 99 PSLNVV----EVKKPNSSAVLVAKSIAFQLEKRSSFRRVIKKAIATVMRESDVKGVKVAC 154
Query: 448 SGKLRG-QRAKSMKFVHG-LMIHSGDPCNDYVNTATRHVLLRQGVLXIKVKI 597
SG+L G + A++ F G + +H+ DY A H GV+ +KV I
Sbjct: 155 SGRLSGAEIARTEVFKEGSIPLHTMRADIDYW-VAEAHT--TYGVIGVKVWI 203
>UniRef50_P56798 Cluster: Chloroplast 30S ribosomal protein S3;
n=78; Streptophyta|Rep: Chloroplast 30S ribosomal
protein S3 - Arabidopsis thaliana (Mouse-ear cress)
Length = 218
Score = 37.5 bits (83), Expect = 0.27
Identities = 31/161 (19%), Positives = 75/161 (46%), Gaps = 2/161 (1%)
Frame = +1
Query: 127 DGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRXIRELTSVVQKRFNIPEQSVXLYAEKV 306
+G + +E++ +III + ++ +K R + EL VQK N + + + ++
Sbjct: 58 EGIARIEIQKRIDLIQIIIYMGFPKLLIEDKPRRVEELQMNVQKELNCVNRKLNIAITRI 117
Query: 307 ATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMK 486
+ AE + +L ++ R+A + ++ +G +V ++G++ G+ ++
Sbjct: 118 SNPYGDPNILAEFIAGQLKNRVSFRKAMKKAIELTEQANTKGIQVQIAGRIDGKEIARVE 177
Query: 487 FVH--GLMIHSGDPCNDYVNTATRHVLLRQGVLXIKVKIML 603
++ + + + + DY + R + GVL IK+ I +
Sbjct: 178 WIREGRVPLQTIEAKIDYCSYTVRTI---YGVLGIKIWIFV 215
>UniRef50_A0MNG0 Cluster: Putative uncharacterized protein; n=1;
Thermus phage phiYS40|Rep: Putative uncharacterized
protein - Thermus phage phiYS40
Length = 1014
Score = 36.7 bits (81), Expect = 0.47
Identities = 24/83 (28%), Positives = 42/83 (50%)
Frame = +1
Query: 67 VGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRXIRELTS 246
+ + +FK+E FL+R L+E Y+ ++ RS I R L +K + E+
Sbjct: 224 ISERIFKSEREIFLSRTLSEF-YNESLNAISIARSNFIAQLNRVNESL-QKAQSPEEVAR 281
Query: 247 VVQKRFNIPEQSVXLYAEKVATR 315
+ ++RFN + LYAE++ R
Sbjct: 282 LQEERFNYLKSLTQLYAEELKIR 304
>UniRef50_Q11HQ8 Cluster: 30S ribosomal protein S3; n=167; cellular
organisms|Rep: 30S ribosomal protein S3 - Mesorhizobium
sp. (strain BNC1)
Length = 235
Score = 36.3 bits (80), Expect = 0.62
Identities = 29/125 (23%), Positives = 55/125 (44%)
Frame = +1
Query: 91 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRXIRELTSVVQKRFNI 270
++ ++ EL + S V + + + I + R ++G+KG I +L + + N
Sbjct: 38 KIRTYIENELKQAAISKVVIERPHKKCRVTIHSARPGLIIGKKGADIEKLRRKITQMTNA 97
Query: 271 PEQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 450
L +V + A A+S+ +L +A RRA ++ M GA G + +
Sbjct: 98 ---ETHLNIVEVRKPEIDARLIAQSIAQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCT 154
Query: 451 GKLRG 465
G+L G
Sbjct: 155 GRLGG 159
>UniRef50_Q52188 Cluster: TraC precursor; n=9; root|Rep: TraC
precursor - Enterococcus faecalis (Streptococcus
faecalis)
Length = 545
Score = 35.5 bits (78), Expect = 1.1
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = +1
Query: 64 FVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIII 183
FVGDG F+ + EFL +L E+ G++V +TP+ + + +
Sbjct: 397 FVGDGEFEKKAGEFLQGQL-EENLEGLKVNITPVPANVFM 435
>UniRef50_Q20F10 Cluster: Chloroplast 30S ribosomal protein S3; n=2;
Chlorophyta|Rep: Chloroplast 30S ribosomal protein S3 -
Oltmannsiellopsis viridis (Marine flagellate)
Length = 235
Score = 35.5 bits (78), Expect = 1.1
Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 5/113 (4%)
Frame = +1
Query: 142 VEVRVTPIRSEIIIMATRTQSVLGEKGRXIRELTSVVQKRFNI-----PEQSVXLYAEKV 306
VEV + R +++ R +K + +R+ V +F P V L V
Sbjct: 66 VEVEIRTTRPGLLVGRKRQNC---DKLKQLRDELQVELNKFRAKNGVSPTAKVALQVTTV 122
Query: 307 ATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG 465
+ AI AE L +L +A RRA VL I +G ++ VSG+L G
Sbjct: 123 QNKSSEAIVIAEFLVNQLERRIAFRRALRRVLSIIQRDRVQGAKIQVSGRLNG 175
>UniRef50_UPI0000DA2268 Cluster: PREDICTED: hypothetical protein;
n=2; Rattus norvegicus|Rep: PREDICTED: hypothetical
protein - Rattus norvegicus
Length = 328
Score = 34.3 bits (75), Expect = 2.5
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 333 PGRISKIQAYRRSRCTSCLLWCSPFHH 413
PGR +A RRSRC+ C W HH
Sbjct: 240 PGRDWSAEASRRSRCSRCCTWSGDIHH 266
>UniRef50_A5AUQ8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 617
Score = 33.9 bits (74), Expect = 3.3
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Frame = +1
Query: 178 IIMATRTQSVLGEK-GRXIRELTSVVQKRFNIPEQSVXLYAEKVATRGLCAIAQAESLRY 354
+I TRT S+ + + IREL SV Q +I + A A RGL A+ ES+R
Sbjct: 101 VIRQTRTLSMTSAQFPKKIRELQSVTQSYVSIDATTKDKAAALAAARGLGRNAKIESVRL 160
Query: 355 KLIGGLAVRRACYGVLRFIMESGARG 432
++ L + +C G+ M + + G
Sbjct: 161 PMLTVLKL-HSCEGITSASMAAISHG 185
>UniRef50_Q2RZ88 Cluster: Putative uncharacterized protein; n=1;
Salinibacter ruber DSM 13855|Rep: Putative
uncharacterized protein - Salinibacter ruber (strain DSM
13855)
Length = 363
Score = 32.7 bits (71), Expect = 7.6
Identities = 25/91 (27%), Positives = 38/91 (41%)
Frame = +1
Query: 259 RFNIPEQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCE 438
R++ S + R + +A E Y L RR C GV R +E G
Sbjct: 263 RYDRGPDSTAQNVRRRTVRVVGPLAPRELAAYDLRLPNEARRPCVGVRRVRVER-LDGTT 321
Query: 439 VVVSGKLRGQRAKSMKFVHGLMIHSGDPCND 531
VV + + G+R K + G + ++GD C D
Sbjct: 322 VVSAPRRPGRRPKRGRLARGALPYAGDDCLD 352
>UniRef50_Q5XIY2 Cluster: Transmembrane protein 56; n=8;
Euteleostomi|Rep: Transmembrane protein 56 - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 264
Score = 32.7 bits (71), Expect = 7.6
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +1
Query: 388 CYGVLRFI-MESGARGCEVVVSGKLRGQRAKSMK 486
C +L I M ARGC V++GKL+G++A S K
Sbjct: 222 CLDILNIIWMYKIARGCYKVITGKLKGRKADSKK 255
>UniRef50_Q6YR15 Cluster: 30S ribosomal protein S3; n=163;
Firmicutes|Rep: 30S ribosomal protein S3 - Onion yellows
phytoplasma
Length = 252
Score = 32.7 bits (71), Expect = 7.6
Identities = 36/146 (24%), Positives = 67/146 (45%), Gaps = 2/146 (1%)
Frame = +1
Query: 166 RSEIIIMATRTQSVLGEKGRXIRELTSVVQKRFNIPEQSVXLYAEKVATRGLCAIAQAES 345
R I + + ++G+ G +L V K + ++ V L +V A+ A++
Sbjct: 67 RITISVHTAKPGVIIGKDGDTRNKL---VAKLKELTQKDVNLNVLEVKNSDKIALLIAQN 123
Query: 346 LRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVHG-LMIHSGD 519
+ +L + RR ++ +++GA+G + ++SG+L G + A+S G + +H+
Sbjct: 124 MAEQLENRMFFRRVQKMAIQKALKAGAKGVKTLISGRLGGAEIARSEGHAEGRVPLHTLR 183
Query: 520 PCNDYVNTATRHVLLRQGVLXIKVKI 597
DY A GVL IKV I
Sbjct: 184 ADIDY---AAVEAHTTYGVLGIKVWI 206
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 642,823,147
Number of Sequences: 1657284
Number of extensions: 12567599
Number of successful extensions: 33343
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 32237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33296
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 47296372782
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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