Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_I12
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    30   0.33 
SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|...    29   0.58 
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    28   1.3  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    27   2.3  
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    27   2.3  
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa...    27   3.1  
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom...    25   9.5  

>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = +3

Query: 153 NKRIINYVITNVYRSLGVQ---CNAESKIASTTKFCTEKL 263
           N+R+INYV+TN++  +  Q     A   +A++ K C + L
Sbjct: 479 NERVINYVLTNIFEDMVSQSPPIPASKLMATSLKKCVQSL 518


>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 863

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
 Frame = +1

Query: 454 LQESHLW---PQYVKERIKTTYGYIAGSLVLTAGSAVAVFRTPALLNLVARNGWMSIIVT 624
           L+   LW   P  +K+++K+      GS    AG + A          +A N W  ++VT
Sbjct: 74  LEYQQLWQSLPVEIKQQVKSLALQTLGSSEHQAGQSAAQLVAAIAAYELATNQWPDLMVT 133

Query: 625 LGLMIGSG 648
           L   +G G
Sbjct: 134 LVANVGEG 141


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
 Frame = +1

Query: 433 SGVKPGTLQESHLWPQYVKERIKT-TYGY---IAGSLVLTAGSAVAVFRTPALLNLVARN 600
           SG  PGT+      P ++ E + + + G+   IA  +  TAG+ +    TP+ +     +
Sbjct: 667 SGSVPGTVLVDVPTPSWITETVTSGSVGFTTTIATPIGTTAGTVLVDIPTPSWVTETVTS 726

Query: 601 GWMSIIVTLGLMIGS 645
           G +    T+   IGS
Sbjct: 727 GSIGFTTTIATPIGS 741



 Score = 25.0 bits (52), Expect = 9.5
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
 Frame = +1

Query: 436  GVKPGTLQESHLWPQYVKERIKT-TYGY---IAGSLVLTAGSAVAVFRTPALLNLVARNG 603
            G   GT+      P +V E + + + G+   IA  +  TAG+ V    TP+ +     +G
Sbjct: 812  GTTAGTVLVDIPTPSWVTETVTSGSVGFTTTIATPVGTTAGTVVVDVPTPSWVTETVTSG 871

Query: 604  WMSIIVTLGLMIGS 645
             +    T+   IGS
Sbjct: 872  SVGFTTTIATPIGS 885


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -3

Query: 647 PEPIIRPNVTIMDIHPFLATKFRSAGVLKTATALPAVSTKEPAMYPYV 504
           P+P   PNVT++   P  A + +   +  T + +P   T + +  P+V
Sbjct: 115 PQPQSHPNVTVISASPARAIEQQPTILSSTDSNIPRPGTVKSSASPFV 162


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -3

Query: 641 PIIRPNVTIMDIHPFLATKFRSAGVLKTATALPAVSTKEPAMYPYVVFIRSF 486
           PII+    +  +H  ++  F   G LKT   +     K PA+ P V+ I+ F
Sbjct: 342 PIIKFVDPLTKVHVDIS--FNQPGGLKTCLVVNGFMKKYPALRPLVIIIKHF 391


>SPBC215.15 |sec13||COPII-coated vesicle component
           Sec13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = +2

Query: 239 HKILYRET--MWSEIMHENLEQGSLHA 313
           H I++RET  +WSE+M     Q S++A
Sbjct: 78  HVIVWRETGGVWSELMDHTAHQASVNA 104


>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
           Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 205 FNVTQSLKSPVPQNFVPRNYVVRNYAREP 291
           F +  S   P  ++F P+NY+VRN +  P
Sbjct: 219 FFLGHSFVPPNFESFHPKNYLVRNSSSHP 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,784,571
Number of Sequences: 5004
Number of extensions: 58396
Number of successful extensions: 158
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)