Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_I12
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    25   0.48 
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   3.4  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   3.4  

>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 234 STTKFCTEKLCGQKLCTRTSNKGRYTLTTHTSGETHGTC 350
           S  K  T +LCG+ LC++ S K R+    H   +    C
Sbjct: 1   SAKKLFTCQLCGKVLCSKASLK-RHVADKHAERQEEYRC 38


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/45 (24%), Positives = 20/45 (44%)
 Frame = +2

Query: 233 QYHKILYRETMWSEIMHENLEQGSLHAHNPHFGRDSWHLLDQMHS 367
           Q+H    +E +W+ +    +  G      P F  + W L++Q  S
Sbjct: 799 QFHN---KELLWTSVKKALMIVGIRPERLPSFDDECWRLMEQCWS 840


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/45 (24%), Positives = 20/45 (44%)
 Frame = +2

Query: 233 QYHKILYRETMWSEIMHENLEQGSLHAHNPHFGRDSWHLLDQMHS 367
           Q+H    +E +W+ +    +  G      P F  + W L++Q  S
Sbjct: 837 QFHN---KELLWTSVKKALMIVGIRPERLPSFDDECWRLMEQCWS 878


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,865
Number of Sequences: 438
Number of extensions: 4418
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)