Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_I10
         (528 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyc...   106   2e-24
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    27   1.3  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    27   2.3  
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar...    26   4.0  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    25   5.3  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   9.2  
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-...    25   9.2  
SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces pombe...    25   9.2  

>SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 126

 Score =  106 bits (255), Expect = 2e-24
 Identities = 48/90 (53%), Positives = 71/90 (78%)
 Frame = +1

Query: 148 PCSKELXQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMXVYRKKFVVYIERIQREKANG 327
           P SKEL +++ ++S+P+R+DD++ V+RG  KG++ GK+  VYRKKF++ IER+ REKANG
Sbjct: 33  PLSKELREQYKIRSLPVRRDDQITVIRGSNKGRE-GKITSVYRKKFLLLIERVTREKANG 91

Query: 328 ATAYVGIHPSKCVIVKLKMNKDRKAILDRR 417
           A+A VGI  SK VI KL ++KDRK ++ R+
Sbjct: 92  ASAPVGIDASKVVITKLHLDKDRKDLIVRK 121



 Score = 57.2 bits (132), Expect = 1e-09
 Identities = 30/53 (56%), Positives = 36/53 (67%)
 Frame = +3

Query: 51  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLL*GTXTKIQCKIHAYSQRR 209
           MKF++ VTSSRRK RK HF APS +RRVLMS+PL      + Q KI +   RR
Sbjct: 1   MKFSRDVTSSRRKQRKAHFGAPSSVRRVLMSAPL--SKELREQYKIRSLPVRR 51


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = -1

Query: 339 ICCCTIGLFSLNPLNVYNK-LFTIHXHHFANLL-AFVVSTYNLNFIVFANRH 190
           + C +I LFS  PL+  N+ L  +    F+ +L   ++ST  + F  F  RH
Sbjct: 825 LTCISIPLFSFEPLSKKNRFLINLFRFSFSFILYNLLISTSTVFFAGFFRRH 876


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +1

Query: 304 IQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGKDNGKY 462
           I R+KA GAT  +   P K ++  +K   D  A ++     ++  + K+N  Y
Sbjct: 724 IGRDKAIGATVRIRRGPMKGLLGVIKDTTDANARVELHTGNKMVTIPKENLLY 776


>SPAC22F8.06 |pam1||20S proteasome component beta
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 221 LYVDTTKANRLAK*CXCIVKSLLYTLRGF 307
           LY D  +    A+ C C+V++LLY  R F
Sbjct: 78  LYHDNHERKMSAQSCACMVRTLLYGKRFF 106


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 2/91 (2%)
 Frame = +3

Query: 9   ISVLSRVVLAKSDRMKFNKQVTSSRRKNRKR--HFSAPSHIRRVLMSSPLL*GTXTKIQC 182
           +S  S ++         N   TSS+R N K    FS  S    V   +    GT   +  
Sbjct: 79  LSTSSPLISTSGQFTSNNVSTTSSQRHNTKTITFFSGTSDYTSVYYDTT---GTDDVVY- 134

Query: 183 KIHAYSQRR*SSGCTWTLQRPTGWQSDAXVS 275
           + H  S+R  S+  TW+   PT   + A  S
Sbjct: 135 EYHPSSERHKSTNDTWSTNLPTNPTTTAIYS 165


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 8/40 (20%), Positives = 20/40 (50%)
 Frame = +2

Query: 26   CRFGEERQNEVQQAGDFLKKEKQEEAFQCSFTYKASVDVL 145
            C F  ++ +E++  G +L  +    +F C   +   V+++
Sbjct: 3300 CEFHHQKFDEIEVPGQYLLHKDNNNSFSCIERFLPEVELI 3339


>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
           [UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +1

Query: 340 VGIHPSKCV-IVKLKMNKDRKAILDRRAKGRLAALGKDNGKY 462
           +GI P K    +K  + KDR A ++RR +G    +G D   Y
Sbjct: 256 IGIDPEKFSDALKSDVVKDRIASIERRLQGVKVIVGVDRLDY 297


>SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 373

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 367 IVKLKMNKDRKAILDRRAKGRLAALGKDNGK 459
           I K++ +KD  A L   + G + A   DNG+
Sbjct: 181 ITKIEAHKDSLACLAFNSDGTMLATASDNGR 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,098,195
Number of Sequences: 5004
Number of extensions: 42740
Number of successful extensions: 114
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)