Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_I10
         (528 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0263 + 2136858-2137331                                          138   3e-33
12_01_0323 - 2459854-2460306                                          137   6e-33
11_01_0317 - 2365493-2365786,2365825-2365953                          103   7e-23
12_02_0996 - 25115643-25115708,25115869-25116107,25116484-251165...    31   0.76 
03_05_0697 + 26888791-26888861,26890468-26890579,26891561-268917...    27   9.3  

>01_01_0263 + 2136858-2137331
          Length = 157

 Score =  138 bits (334), Expect = 3e-33
 Identities = 66/103 (64%), Positives = 85/103 (82%)
 Frame = +1

Query: 154 SKELXQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMXVYRKKFVVYIERIQREKANGAT 333
           S EL  K+NV+S+PIRKDDEVQVVRG YKG++ GKV+ VYR+++V+++ERI REK NG+T
Sbjct: 35  SSELRHKYNVRSIPIRKDDEVQVVRGSYKGRE-GKVVQVYRRRWVIHVERITREKVNGST 93

Query: 334 AYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGKDNGKY 462
             VGIHPSK V+ KLK++KDRKAILDR+A+GR  A  K  GK+
Sbjct: 94  VNVGIHPSKVVVTKLKLDKDRKAILDRKARGR--AADKAKGKF 134



 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 24/34 (70%), Positives = 28/34 (82%)
 Frame = +3

Query: 51  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPL 152
           MK N +VTSSRRK RK HF+APS +RRVLMS+ L
Sbjct: 1   MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAAL 34


>12_01_0323 - 2459854-2460306
          Length = 150

 Score =  137 bits (331), Expect = 6e-33
 Identities = 66/103 (64%), Positives = 84/103 (81%)
 Frame = +1

Query: 154 SKELXQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMXVYRKKFVVYIERIQREKANGAT 333
           S EL  K+NV+S+PIRKDDEVQVVRG YKG++ GKV+ VYR+++V+++ERI REK NG+T
Sbjct: 35  STELRHKYNVRSIPIRKDDEVQVVRGSYKGRE-GKVVQVYRRRWVIHVERITREKVNGST 93

Query: 334 AYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGKDNGKY 462
             VGIHPSK V+ KLK++KDRKAILDR+A GR  A  K  GK+
Sbjct: 94  VNVGIHPSKVVVTKLKLDKDRKAILDRKASGR--AADKAKGKF 134



 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 24/34 (70%), Positives = 28/34 (82%)
 Frame = +3

Query: 51  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPL 152
           MK N +VTSSRRK RK HF+APS +RRVLMS+ L
Sbjct: 1   MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAAL 34


>11_01_0317 - 2365493-2365786,2365825-2365953
          Length = 140

 Score =  103 bits (248), Expect = 7e-23
 Identities = 50/81 (61%), Positives = 65/81 (80%)
 Frame = +1

Query: 220 VVRGHYKGQQVGKVMXVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRK 399
           VVRG YKG++ GKV+ VYR+++V+++ERI REK NG+T  VGIHPSK V+ KLK++KDRK
Sbjct: 44  VVRGSYKGRE-GKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRK 102

Query: 400 AILDRRAKGRLAALGKDNGKY 462
           AILDR+A GR  A  K  GK+
Sbjct: 103 AILDRKASGR--AADKAKGKF 121



 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 24/34 (70%), Positives = 28/34 (82%)
 Frame = +3

Query: 51  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPL 152
           MK N +VTSSRRK RK HF+APS +RRVLMS+ L
Sbjct: 1   MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAAL 34


>12_02_0996 -
           25115643-25115708,25115869-25116107,25116484-25116577,
           25116726-25116864,25116960-25117081,25117261-25117491,
           25117583-25117644,25118335-25118461,25118890-25119183,
           25119266-25119622
          Length = 576

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 17/65 (26%), Positives = 28/65 (43%)
 Frame = +3

Query: 291 IH*EDSKRKGQWCNSICRHSPFKVCDCQVEDE*RPQSNPRSQSKGQTGCTWQRQR*IHRG 470
           +H   S+ +G      C H+  K C C +  E + Q+  R  +  Q     ++ R I R 
Sbjct: 463 LHENLSQVEGHDIALCCNHNYMKQCKCSIAQEPQLQARARQNAASQQSQLHEKGRQIDRS 522

Query: 471 NCHSH 485
             HS+
Sbjct: 523 AVHSN 527


>03_05_0697 + 26888791-26888861,26890468-26890579,26891561-26891757,
            26892215-26892266,26893530-26893795,26894007-26894229,
            26895154-26895327,26895408-26895485,26895566-26895817,
            26896138-26898204,26899477-26901322,26901474-26901574,
            26902179-26902535,26902681-26902799,26903558-26903559,
            26903630-26903662,26903709-26903841,26904285-26904537,
            26905688-26905912,26906401-26906466,26907373-26907471,
            26908528-26908545,26908546-26908893,26909878-26910354
          Length = 2522

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 160  ELXQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMXVYRKKFVVYIERI 306
            E   KF   + P  K D +Q+V  + + QQ    + V  K+F +YI  +
Sbjct: 1278 ETTWKFLATTNPYEKVDRLQIVSEYMEIQQTDGHVDVSAKEFKMYISSL 1326


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,534,299
Number of Sequences: 37544
Number of extensions: 279700
Number of successful extensions: 646
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)