Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_I09
(483 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41094 Cluster: 40S ribosomal protein S18; n=137; Eukar... 238 5e-62
UniRef50_P62269 Cluster: 40S ribosomal protein S18; n=58; Eukary... 219 3e-56
UniRef50_UPI00001C91B1 Cluster: PREDICTED: similar to ribosomal ... 138 5e-32
UniRef50_UPI00006CC3CE Cluster: ribosomal protein S13p/S18e cont... 136 2e-31
UniRef50_Q7QRY7 Cluster: GLP_549_8004_7540; n=1; Giardia lamblia... 124 8e-28
UniRef50_A2E0E1 Cluster: Ribosomal protein S13p/S18e, putative; ... 110 2e-23
UniRef50_Q8SRP2 Cluster: 40S ribosomal protein S18; n=1; Encepha... 106 3e-22
UniRef50_Q8TRR2 Cluster: 30S ribosomal protein S13P; n=4; Euryar... 100 3e-20
UniRef50_Q0W1V6 Cluster: 30S ribosomal protein S13P; n=11; Archa... 97 1e-19
UniRef50_P54019 Cluster: 30S ribosomal protein S13P; n=9; Euryar... 97 1e-19
UniRef50_Q9HJD6 Cluster: 30S ribosomal protein S13P; n=4; Thermo... 94 1e-18
UniRef50_Q96YV7 Cluster: 30S ribosomal protein S13P; n=10; Archa... 94 1e-18
UniRef50_A0RY01 Cluster: 30S ribosomal protein S13P; n=2; Thermo... 91 2e-17
UniRef50_Q4V607 Cluster: IP07925p; n=3; Sophophora|Rep: IP07925p... 90 2e-17
UniRef50_Q00861 Cluster: 30S ribosomal protein S13P; n=5; Haloba... 84 2e-15
UniRef50_Q6LXN1 Cluster: 30S ribosomal protein S13P; n=4; Methan... 83 2e-15
UniRef50_Q3LW54 Cluster: Ribosomal protein S18; n=1; Bigelowiell... 81 1e-14
UniRef50_A0SNY5 Cluster: SSU ribosomal protein S13AB; n=1; uncul... 81 2e-14
UniRef50_A0EBZ1 Cluster: Chromosome undetermined scaffold_89, wh... 79 5e-14
UniRef50_A4WM28 Cluster: 30S ribosomal protein S13P; n=2; Thermo... 76 4e-13
UniRef50_Q00VP7 Cluster: Chromosome 14 contig 1, DNA sequence; n... 73 3e-12
UniRef50_Q74M95 Cluster: 30S ribosomal protein S13P; n=1; Nanoar... 69 6e-11
UniRef50_Q8H583 Cluster: Ribosomal protein S18-like; n=1; Oryza ... 66 4e-10
UniRef50_UPI0001555DA0 Cluster: PREDICTED: similar to olfactory ... 55 7e-07
UniRef50_A7PUB9 Cluster: Chromosome chr7 scaffold_31, whole geno... 49 6e-05
UniRef50_Q9X1I5 Cluster: 30S ribosomal protein S13; n=14; Bacter... 48 8e-05
UniRef50_Q7QRY8 Cluster: GLP_549_7513_8304; n=1; Giardia lamblia... 44 0.002
UniRef50_Q601J1 Cluster: 30S ribosomal protein S13; n=3; Mycopla... 34 1.9
UniRef50_Q98JF7 Cluster: Mll1963 protein; n=1; Mesorhizobium lot... 33 2.6
UniRef50_A5FGA8 Cluster: DNA-(Apurinic or apyrimidinic site) lya... 33 2.6
UniRef50_Q7PY55 Cluster: ENSANGP00000013280; n=4; Endopterygota|... 33 3.4
UniRef50_Q6UVP6 Cluster: Ribosomal protein S13; n=1; Pseudendocl... 28 3.4
UniRef50_Q4FQV4 Cluster: Putative uncharacterized protein; n=2; ... 32 7.8
UniRef50_A0NKF0 Cluster: Rhamnosyltransferase; n=1; Oenococcus o... 32 7.8
UniRef50_Q7RQE1 Cluster: Protein factor associated with neutral-... 32 7.8
>UniRef50_P41094 Cluster: 40S ribosomal protein S18; n=137;
Eukaryota|Rep: 40S ribosomal protein S18 - Drosophila
melanogaster (Fruit fly)
Length = 152
Score = 238 bits (582), Expect = 5e-62
Identities = 110/141 (78%), Positives = 120/141 (85%)
Frame = +3
Query: 60 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 239
MSLVIP+KFQHILRIMNTNIDGKRKV AMTAIKGVGRRYSNIVLKKAD+DL KRAGECT
Sbjct: 1 MSLVIPEKFQHILRIMNTNIDGKRKVGIAMTAIKGVGRRYSNIVLKKADVDLTKRAGECT 60
Query: 240 EXEVEKIITIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSXXXXXXXXXXXXXAH 419
E EV+K++TI+SNP QYK+P WFLNRQKDI+DGKY QLTSSNLDS +H
Sbjct: 61 EEEVDKVVTIISNPLQYKVPNWFLNRQKDIIDGKYWQLTSSNLDSKLRDDLERLKKIRSH 120
Query: 420 RGMRHYWGLRVRGQHTXTTGR 482
RG+RHYWGLRVRGQHT TTGR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGR 141
>UniRef50_P62269 Cluster: 40S ribosomal protein S18; n=58;
Eukaryota|Rep: 40S ribosomal protein S18 - Homo sapiens
(Human)
Length = 152
Score = 219 bits (535), Expect = 3e-56
Identities = 98/141 (69%), Positives = 117/141 (82%)
Frame = +3
Query: 60 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 239
MSLVIP+KFQHILR++NTNIDG+RK+ FA+TAIKGVGRRY+++VL+KADIDL KRAGE T
Sbjct: 1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELT 60
Query: 240 EXEVEKIITIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSXXXXXXXXXXXXXAH 419
E EVE++ITIM NP QYKIP WFLNRQKD+ DGKYSQ+ ++ LD+ AH
Sbjct: 61 EDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAH 120
Query: 420 RGMRHYWGLRVRGQHTXTTGR 482
RG+RH+WGLRVRGQHT TTGR
Sbjct: 121 RGLRHFWGLRVRGQHTKTTGR 141
>UniRef50_UPI00001C91B1 Cluster: PREDICTED: similar to ribosomal
protein S18; n=2; Rattus norvegicus|Rep: PREDICTED:
similar to ribosomal protein S18 - Rattus norvegicus
Length = 170
Score = 138 bits (335), Expect = 5e-32
Identities = 69/140 (49%), Positives = 95/140 (67%)
Frame = +3
Query: 60 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 239
MSLVI +K QHIL+++NTNID +++ FA+TA KG +RY+++VL+KA IDL K AGE T
Sbjct: 1 MSLVISEKSQHILQVLNTNIDEQQETAFAITATKGAEQRYAHVVLRKAGIDLTKMAGELT 60
Query: 240 EXEVEKIITIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSXXXXXXXXXXXXXAH 419
E +VE++ITIM NP QY+IP QK + DG+ SQ+ ++ LD+ AH
Sbjct: 61 EDKVERVITIMQNPRQYEIP------QKGVRDGRCSQVPANGLDNKLREELERLKKIRAH 114
Query: 420 RGMRHYWGLRVRGQHTXTTG 479
RG+RH+WGL V Q T + G
Sbjct: 115 RGLRHFWGLHVHCQLTMSHG 134
>UniRef50_UPI00006CC3CE Cluster: ribosomal protein S13p/S18e
containing protein; n=1; Tetrahymena thermophila
SB210|Rep: ribosomal protein S13p/S18e containing
protein - Tetrahymena thermophila SB210
Length = 155
Score = 136 bits (329), Expect = 2e-31
Identities = 66/143 (46%), Positives = 91/143 (63%), Gaps = 2/143 (1%)
Frame = +3
Query: 60 MSLVIPDK--FQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGE 233
MS VI + F++I RI+NTNIDGKR A+T I+G+GRR++ I+ K ID + RAG
Sbjct: 1 MSFVIEKESDFKYIHRILNTNIDGKRITPIALTGIRGIGRRFAYIICKVLKIDPNARAGL 60
Query: 234 CTEXEVEKIITIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSXXXXXXXXXXXXX 413
TE + KI ++++P + IP W LNR D DGK Q+ S+ LD+
Sbjct: 61 LTEDQCNKITDLIADPEAHGIPTWLLNRINDFKDGKNYQMASNTLDTKMREDLERLKKIK 120
Query: 414 AHRGMRHYWGLRVRGQHTXTTGR 482
+HRG+RH+WGL+VRGQHT T+GR
Sbjct: 121 SHRGLRHFWGLKVRGQHTKTSGR 143
>UniRef50_Q7QRY7 Cluster: GLP_549_8004_7540; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_549_8004_7540 - Giardia lamblia ATCC
50803
Length = 154
Score = 124 bits (300), Expect = 8e-28
Identities = 56/140 (40%), Positives = 85/140 (60%)
Frame = +3
Query: 63 SLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTE 242
++V P+ ++ +LR+ NTNI GK + A+ IKG+GRR++N+ LKKA+ID+ KRAGE T
Sbjct: 3 TIVQPNDYRDLLRMFNTNIQGKVVLECALVGIKGIGRRFANVALKKANIDVHKRAGELTA 62
Query: 243 XEVEKIITIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSXXXXXXXXXXXXXAHR 422
E + ++ ++ +P + IP W LNR D GK + + + S R
Sbjct: 63 AEEDALMKVLEDPLSHGIPAWMLNRNNDFESGKDMHILVNTIASTHRADLERLRKTRCER 122
Query: 423 GMRHYWGLRVRGQHTXTTGR 482
G+RH+ L+VRGQHT +TGR
Sbjct: 123 GVRHHHNLKVRGQHTKSTGR 142
>UniRef50_A2E0E1 Cluster: Ribosomal protein S13p/S18e, putative;
n=3; Trichomonas vaginalis G3|Rep: Ribosomal protein
S13p/S18e, putative - Trichomonas vaginalis G3
Length = 155
Score = 110 bits (264), Expect = 2e-23
Identities = 51/136 (37%), Positives = 85/136 (62%)
Frame = +3
Query: 75 PDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEXEVE 254
P F+ ++R+++TN+DG+R + A+T I G+GRR++ V+++A +D +RAG T E E
Sbjct: 8 PAAFRDMVRMLSTNVDGRRPLYLALTNISGIGRRFAYAVVRRAGLDPLRRAGTLTPKEEE 67
Query: 255 KIITIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSXXXXXXXXXXXXXAHRGMRH 434
I++I+ NP +++IP W LNR+ D G+ + +++L + RG+RH
Sbjct: 68 LIVSIIQNPTEHQIPVWMLNRRFDRATGQNTHWVATDLSANIRAEIERMKKMRMKRGIRH 127
Query: 435 YWGLRVRGQHTXTTGR 482
GL+VRGQ T +TGR
Sbjct: 128 GLGLKVRGQCTKSTGR 143
>UniRef50_Q8SRP2 Cluster: 40S ribosomal protein S18; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S18
- Encephalitozoon cuniculi
Length = 153
Score = 106 bits (254), Expect = 3e-22
Identities = 54/136 (39%), Positives = 79/136 (58%)
Frame = +3
Query: 75 PDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEXEVE 254
P + Q+I+RI NTNIDG +++ FA+T I+G+G R + + K+ IDL KRAGE E E++
Sbjct: 7 PAEVQYIVRIHNTNIDGTKRIPFALTKIRGIGIRIATAICKRLGIDLRKRAGEMGEDEMK 66
Query: 255 KIITIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSXXXXXXXXXXXXXAHRGMRH 434
+I + +P IP ++N Q+DI+DG S L + LD+ R R
Sbjct: 67 RISDAILDPASVGIPESYMNHQRDIIDGTTSHLIGTRLDADLRMMIERGKKNKRIRAYRL 126
Query: 435 YWGLRVRGQHTXTTGR 482
GL+VRGQ T + GR
Sbjct: 127 DVGLKVRGQRTKSNGR 142
>UniRef50_Q8TRR2 Cluster: 30S ribosomal protein S13P; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S13P -
Methanosarcina acetivorans
Length = 162
Score = 99.5 bits (237), Expect = 3e-20
Identities = 49/135 (36%), Positives = 77/135 (57%)
Frame = +3
Query: 78 DKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEXEVEK 257
++ +H++RIMNT++ G + V +A+T + GVGRR + ++ K A +D G E EV K
Sbjct: 18 EELRHLVRIMNTDLQGAKPVQYALTGLPGVGRRTAKLIAKGAGVDPSAILGYLPEEEVAK 77
Query: 258 IITIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSXXXXXXXXXXXXXAHRGMRHY 437
+ T + + +P W LNRQKD+ G+ L +++ A+RG+RH
Sbjct: 78 LDTAIGK-FEDIVPSWMLNRQKDLATGQDKHLLGTDILLTFREDINNLKKVRAYRGLRHE 136
Query: 438 WGLRVRGQHTXTTGR 482
GL+VRGQ T +TGR
Sbjct: 137 RGLKVRGQRTKSTGR 151
>UniRef50_Q0W1V6 Cluster: 30S ribosomal protein S13P; n=11;
Archaea|Rep: 30S ribosomal protein S13P - Uncultured
methanogenic archaeon RC-I
Length = 224
Score = 97.5 bits (232), Expect = 1e-19
Identities = 47/135 (34%), Positives = 77/135 (57%)
Frame = +3
Query: 78 DKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEXEVEK 257
D+ ++I+RI NT++DG + V FA+T IKG+G R S I+ ++A +D G +V+K
Sbjct: 67 DEIKYIVRIANTDLDGTQTVEFALTGIKGIGNRISKIIARQAQVDPHATMGYLPPEQVDK 126
Query: 258 IITIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSXXXXXXXXXXXXXAHRGMRHY 437
+ ++ N + +P W LNR++DI G+ L +L +++G+RH
Sbjct: 127 LRAVIDN-LEANVPVWMLNRRRDIYTGEDKHLYGVDLTMAVKEDINIMKKIRSYKGIRHE 185
Query: 438 WGLRVRGQHTXTTGR 482
G +VRGQ T +TGR
Sbjct: 186 RGQKVRGQRTKSTGR 200
>UniRef50_P54019 Cluster: 30S ribosomal protein S13P; n=9;
Euryarchaeota|Rep: 30S ribosomal protein S13P -
Methanococcus jannaschii
Length = 150
Score = 97.5 bits (232), Expect = 1e-19
Identities = 46/134 (34%), Positives = 78/134 (58%)
Frame = +3
Query: 81 KFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEXEVEKI 260
+F++++R+ T++DG +K++ A+ I GVG + +++ A +D +K AG TE EV+KI
Sbjct: 5 EFKYLIRVSRTDLDGNKKLIMALQDIYGVGEAMARAIVRVAKLDPNKLAGYLTEEEVKKI 64
Query: 261 ITIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSXXXXXXXXXXXXXAHRGMRHYW 440
++++P ++ IP W NR+KD V G+ + S+L +RG+RH
Sbjct: 65 EEVLADPAKFGIPSWMFNRRKDYVTGEDKHVIESDLMIIKQEDINRLKRIRCYRGIRHEL 124
Query: 441 GLRVRGQHTXTTGR 482
GL RGQ T +T R
Sbjct: 125 GLPCRGQRTKSTFR 138
>UniRef50_Q9HJD6 Cluster: 30S ribosomal protein S13P; n=4;
Thermoplasmatales|Rep: 30S ribosomal protein S13P -
Thermoplasma acidophilum
Length = 171
Score = 94.3 bits (224), Expect = 1e-18
Identities = 43/133 (32%), Positives = 79/133 (59%)
Frame = +3
Query: 84 FQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEXEVEKII 263
FQ+I+RI N +++G+R + A++ +KG+G R ++ ++ D+ +DK+ GE E ++EK+
Sbjct: 28 FQYIVRIANKDLNGERLLPLALSDLKGIGERLGYVIAERLDLPIDKKIGELKEEQLEKLR 87
Query: 264 TIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSXXXXXXXXXXXXXAHRGMRHYWG 443
+ +Y +P W LN +++ V GK L S++L+ +++G+RH G
Sbjct: 88 EYV-EAKEYDLPEWLLNHRREPVTGKNLNLVSTDLEIQVQEDINLMKKIRSYKGIRHEKG 146
Query: 444 LRVRGQHTXTTGR 482
+VRGQ T + GR
Sbjct: 147 KKVRGQRTRSNGR 159
>UniRef50_Q96YV7 Cluster: 30S ribosomal protein S13P; n=10;
Archaea|Rep: 30S ribosomal protein S13P - Sulfolobus
tokodaii
Length = 172
Score = 94.3 bits (224), Expect = 1e-18
Identities = 44/134 (32%), Positives = 76/134 (56%)
Frame = +3
Query: 81 KFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEXEVEKI 260
+F++I+R+ ++DG KV +A+ +KG+G + ++ K +D D+R GE ++ +++KI
Sbjct: 6 QFKYIVRLFGQDVDGTMKVPYALAMVKGIGYNTARAIVFKLGLDKDRRLGELSDEDIKKI 65
Query: 261 ITIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSXXXXXXXXXXXXXAHRGMRHYW 440
+++ ++P W NR+KD G L +S+L + RG+RH
Sbjct: 66 ENYLTDKKILEVPNWMYNRRKDYESGIDMHLVTSDLIFYVRNDIEREKKIKSWRGVRHSL 125
Query: 441 GLRVRGQHTXTTGR 482
GL+VRGQ T TTGR
Sbjct: 126 GLKVRGQRTRTTGR 139
>UniRef50_A0RY01 Cluster: 30S ribosomal protein S13P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S13P -
Cenarchaeum symbiosum
Length = 227
Score = 90.6 bits (215), Expect = 2e-17
Identities = 40/134 (29%), Positives = 74/134 (55%)
Frame = +3
Query: 81 KFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEXEVEKI 260
+++HI+RI+ ++ G++K + + I+G+G ++ +L ID + G T+ +V I
Sbjct: 50 EYKHIVRILGNDLPGEKKAVVGLRQIRGIGYGFATAILDVLKIDNNSNIGYLTDEQVASI 109
Query: 261 ITIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSXXXXXXXXXXXXXAHRGMRHYW 440
++ +P P WFLNR+KD+ G+ + +S+++ + +G RH +
Sbjct: 110 EKLLQDPAGAGFPTWFLNRRKDLETGEDRHIFTSDIEFTVRNDVERERVSGSWKGYRHMF 169
Query: 441 GLRVRGQHTXTTGR 482
GL+VRGQ T TGR
Sbjct: 170 GLKVRGQRTRNTGR 183
>UniRef50_Q4V607 Cluster: IP07925p; n=3; Sophophora|Rep: IP07925p -
Drosophila melanogaster (Fruit fly)
Length = 246
Score = 90.2 bits (214), Expect = 2e-17
Identities = 39/48 (81%), Positives = 45/48 (93%)
Frame = +3
Query: 156 IKGVGRRYSNIVLKKADIDLDKRAGECTEXEVEKIITIMSNPXQYKIP 299
IKGVGRRYSNIVLKKAD+DL KRAGECTE EV+K++TI+SNP QYK+P
Sbjct: 1 IKGVGRRYSNIVLKKADVDLTKRAGECTEEEVDKVVTIISNPLQYKVP 48
>UniRef50_Q00861 Cluster: 30S ribosomal protein S13P; n=5;
Halobacteriaceae|Rep: 30S ribosomal protein S13P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 177
Score = 83.8 bits (198), Expect = 2e-15
Identities = 41/135 (30%), Positives = 72/135 (53%)
Frame = +3
Query: 78 DKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEXEVEK 257
+ ++ +RI T++DG + V A+T + G+G R + I+ +KAD+D G+ + +E+
Sbjct: 18 EDIRYFVRIGQTDLDGTKSVERALTELNGIGHRAARIIAQKADVDRRAVFGKLDDDVIER 77
Query: 258 IITIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSXXXXXXXXXXXXXAHRGMRHY 437
++ + N +P W N QKD G+ + T ++L ++RG+RH
Sbjct: 78 VVERVENFAD-DVPEWMTNHQKDYFTGETTHETGNDLQLTRRQDINRMKMIDSYRGVRHK 136
Query: 438 WGLRVRGQHTXTTGR 482
G +VRGQ T +TGR
Sbjct: 137 RGQKVRGQRTKSTGR 151
>UniRef50_Q6LXN1 Cluster: 30S ribosomal protein S13P; n=4;
Methanococcus|Rep: 30S ribosomal protein S13P -
Methanococcus maripaludis
Length = 149
Score = 83.4 bits (197), Expect = 2e-15
Identities = 38/129 (29%), Positives = 70/129 (54%)
Frame = +3
Query: 81 KFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEXEVEKI 260
+F+H +RI T+++GK + +A+ +KG+GR + V++ ++D ++AG + +V KI
Sbjct: 5 EFKHRIRISKTDLEGKNPLEYALQDMKGIGRAMARAVIRVTELDPKQQAGYLADEDVLKI 64
Query: 261 ITIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSXXXXXXXXXXXXXAHRGMRHYW 440
+++ +P + IP W NR+KD+ G L ++L ++G+RH
Sbjct: 65 ESVLEDPATHGIPSWMFNRKKDVYSGLDKHLIETDLVLTVQEDITNMKKIRCYKGIRHEL 124
Query: 441 GLRVRGQHT 467
L RGQ T
Sbjct: 125 RLPCRGQRT 133
>UniRef50_Q3LW54 Cluster: Ribosomal protein S18; n=1; Bigelowiella
natans|Rep: Ribosomal protein S18 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 159
Score = 81.0 bits (191), Expect = 1e-14
Identities = 40/135 (29%), Positives = 67/135 (49%)
Frame = +3
Query: 78 DKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEXEVEK 257
+K +RI + NI+G F + IKGVG R SN++ K D++ + + ++E+
Sbjct: 13 EKSMTFIRIFDCNINGSLSCNFGLRNIKGVGIRMSNVLRKILKKDINYKLYNIEKADLEE 72
Query: 258 IITIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSXXXXXXXXXXXXXAHRGMRHY 437
++ I + P W +NR+ D + G + S+ LDS ++G+RH
Sbjct: 73 VVNIFGKSSRKAFPSWLMNRRADFLTGDNLHVLSTVLDSALQEDIKRLVTIKNNKGLRHL 132
Query: 438 WGLRVRGQHTXTTGR 482
L+ RGQHT + GR
Sbjct: 133 SRLKTRGQHTKSNGR 147
>UniRef50_A0SNY5 Cluster: SSU ribosomal protein S13AB; n=1;
uncultured euryarchaeote ARMAN-2|Rep: SSU ribosomal
protein S13AB - uncultured euryarchaeote ARMAN-2
Length = 177
Score = 80.6 bits (190), Expect = 2e-14
Identities = 43/138 (31%), Positives = 71/138 (51%), Gaps = 4/138 (2%)
Frame = +3
Query: 81 KFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSN----IVLKKADIDLDKRAGECTEXE 248
K I+RI N +I+G + A+ +KG+G+ S+ ++ K +ID G E +
Sbjct: 15 KAMSIVRIANKDINGGLNIQRALDQVKGIGQTMSHSLSYVIEHKFNIDPSTPIGSLNESQ 74
Query: 249 VEKIITIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSXXXXXXXXXXXXXAHRGM 428
V ++ ++ +P +Y +P + LNR+ D+ GK L ++L RG
Sbjct: 75 VTQVEELIKDPHKYGVPKYLLNRRNDMDTGKDMHLIGNDLIFAVRQSINRDVTLRVWRGY 134
Query: 429 RHYWGLRVRGQHTXTTGR 482
RH +G +VRGQHT +TGR
Sbjct: 135 RHQYGQKVRGQHTRSTGR 152
>UniRef50_A0EBZ1 Cluster: Chromosome undetermined scaffold_89, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_89,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 193
Score = 79.0 bits (186), Expect = 5e-14
Identities = 45/134 (33%), Positives = 78/134 (58%), Gaps = 4/134 (2%)
Frame = +3
Query: 60 MSLVIP--DKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGE 233
MSLV+ D+F+ I+RI+NTN+DGK+++ + + +IKG+GRR++ + K ++L KRAGE
Sbjct: 1 MSLVLEKADQFRQIIRILNTNVDGKQQMAYEIRSIKGIGRRFAIQICKVLRLNLTKRAGE 60
Query: 234 CTEXEVEKIITIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSXXXXXXXXXXXXX 413
T+ E KI ++ QY +D+ +GK ++T++ L++
Sbjct: 61 LTDEEAHKITEVIKMVPQY---------IRDLKNGKNYEVTTNELETKLREDLERIKKIK 111
Query: 414 AHRG--MRHYWGLR 449
+ +RH+WGLR
Sbjct: 112 YSQWLCLRHHWGLR 125
>UniRef50_A4WM28 Cluster: 30S ribosomal protein S13P; n=2;
Thermoproteaceae|Rep: 30S ribosomal protein S13P -
Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321)
Length = 152
Score = 76.2 bits (179), Expect = 4e-13
Identities = 42/130 (32%), Positives = 67/130 (51%)
Frame = +3
Query: 93 ILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEXEVEKIITIM 272
I+R+ +T+++G ++V +A+ I+G+G + + K ID G E ++ K+ +
Sbjct: 8 IVRVGDTDLEGNKQVAYALAKIRGIGIASAYAICWKLGIDPHAVLGALPEEQINKLDWAV 67
Query: 273 SNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSXXXXXXXXXXXXXAHRGMRHYWGLRV 452
N + P WFLNR+KD G+ L S L + +G+RH GL+V
Sbjct: 68 RNLHEVA-PAWFLNRRKDPETGRDMHLIGSELVLAAKRDVDLMKKLKSWKGIRHSLGLKV 126
Query: 453 RGQHTXTTGR 482
RGQ T TTGR
Sbjct: 127 RGQRTVTTGR 136
>UniRef50_Q00VP7 Cluster: Chromosome 14 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 14 contig 1, DNA
sequence - Ostreococcus tauri
Length = 272
Score = 72.9 bits (171), Expect = 3e-12
Identities = 41/135 (30%), Positives = 68/135 (50%)
Frame = -2
Query: 464 VLTTHTKAPVMSHPSVSANLLEPXQXFTEF*IQVGGGQLAVFTINNILLPI*EPVWYLIL 285
VLTT T APV+S SV +NLL+ + + +++ G L I I+L + EP+ L
Sbjct: 44 VLTTDTDAPVVSQTSVVSNLLQTLEVVAQLRVELVGHHLRELAILEIVLAVQEPIRNSEL 103
Query: 284 XRIRHDSDNFFNLXFCAFASTLVKINVGFFENNVGVPPANTFDSRHRKHNLAFAIDVRIH 105
R+ HD F L L +I++ F + VG A+ D H+L ++V +
Sbjct: 104 SRVGHDHHQRFQLRGGELPGALPEIDLSLFAHQVGEAAADPLDLGQGVHHLLTTVNVGVE 163
Query: 104 DTKNMLKFVWNDQRH 60
D ++L+ + +D+ H
Sbjct: 164 DADDVLEIITDDEAH 178
>UniRef50_Q74M95 Cluster: 30S ribosomal protein S13P; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S13P -
Nanoarchaeum equitans
Length = 153
Score = 68.9 bits (161), Expect = 6e-11
Identities = 37/130 (28%), Positives = 62/130 (47%)
Frame = +3
Query: 93 ILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEXEVEKIITIM 272
I+ I + ++DG + + + + GV +++ V ID ++ G ++ E+EK+ +
Sbjct: 13 IVHIADVDLDGHKPIYVELRKVVGVNWMFAHAVCAALGIDKWRKIGSLSDEELEKLEDAL 72
Query: 273 SNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSXXXXXXXXXXXXXAHRGMRHYWGLRV 452
NP +Y IP W NR++D GK L ++ + RG RH GL V
Sbjct: 73 RNPWKYGIPSWLYNRRRDPETGKDLHLVGNDYKITMEFDIKREMQINSWRGYRHREGLPV 132
Query: 453 RGQHTXTTGR 482
RGQ T + R
Sbjct: 133 RGQRTRSHHR 142
>UniRef50_Q8H583 Cluster: Ribosomal protein S18-like; n=1; Oryza
sativa (japonica cultivar-group)|Rep: Ribosomal protein
S18-like - Oryza sativa subsp. japonica (Rice)
Length = 145
Score = 66.1 bits (154), Expect = 4e-10
Identities = 29/56 (51%), Positives = 36/56 (64%)
Frame = +3
Query: 315 RQKDIVDGKYSQLTSSNLDSXXXXXXXXXXXXXAHRGMRHYWGLRVRGQHTXTTGR 482
++KD DG++SQ+ S+ LD HRG+RHYWGLRVRGQHT TTGR
Sbjct: 79 QKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGR 134
>UniRef50_UPI0001555DA0 Cluster: PREDICTED: similar to olfactory
specific medium-chain acyl CoA synthetase; n=1;
Ornithorhynchus anatinus|Rep: PREDICTED: similar to
olfactory specific medium-chain acyl CoA synthetase -
Ornithorhynchus anatinus
Length = 176
Score = 55.2 bits (127), Expect = 7e-07
Identities = 22/28 (78%), Positives = 24/28 (85%)
Frame = +3
Query: 270 MSNPXQYKIPXWFLNRQKDIVDGKYSQL 353
M NP QYKIP WFLNRQKD+ DGKYSQ+
Sbjct: 1 MQNPRQYKIPDWFLNRQKDVKDGKYSQV 28
>UniRef50_A7PUB9 Cluster: Chromosome chr7 scaffold_31, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr7 scaffold_31, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 48
Score = 48.8 bits (111), Expect = 6e-05
Identities = 19/41 (46%), Positives = 29/41 (70%)
Frame = +2
Query: 50 LNQNVAGHSRQISTYSSYHEYEHRWQTQGYVCDDGYQRCWP 172
L+ +V G R IST++S ++E RW+T+ +VC D +QR WP
Sbjct: 5 LSMSVLGSERGISTHTSCAQHERRWETEDHVCSDLHQRYWP 45
>UniRef50_Q9X1I5 Cluster: 30S ribosomal protein S13; n=14;
Bacteria|Rep: 30S ribosomal protein S13 - Thermotoga
maritima
Length = 125
Score = 48.4 bits (110), Expect = 8e-05
Identities = 38/128 (29%), Positives = 57/128 (44%)
Frame = +3
Query: 99 RIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEXEVEKIITIMSN 278
RI+ + +KV A+T I G+GR S +LK ID +KR G+ T+ E+ KI + +
Sbjct: 3 RIVGVELPNNKKVWVALTYIYGIGRSRSFEILKNTGIDPEKRVGDLTDEEISKITKYIQD 62
Query: 279 PXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSXXXXXXXXXXXXXAHRGMRHYWGLRVRG 458
+K V+G+ N+ +RG+RH GL VRG
Sbjct: 63 --HFK------------VEGELRSEVERNI--------RRLIEIGCYRGIRHKLGLPVRG 100
Query: 459 QHTXTTGR 482
Q T + R
Sbjct: 101 QKTRSNAR 108
>UniRef50_Q7QRY8 Cluster: GLP_549_7513_8304; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_549_7513_8304 - Giardia lamblia ATCC
50803
Length = 263
Score = 43.6 bits (98), Expect = 0.002
Identities = 38/143 (26%), Positives = 60/143 (41%), Gaps = 4/143 (2%)
Frame = -2
Query: 476 SSXSVLTTHTKAPVMSHPSVSANLLEPXQXFTEF*IQVGGG---QLAVFTINNILLPI*E 306
S VL + + V++ +++A+ E Q T + G G + VF I++ I
Sbjct: 25 SGLCVLPANLQVVVVADTALAASFTETLQVRT---VGRGYGIDQNVHVFARFKIIVTIKH 81
Query: 305 PVWYLILXRIRHDSDNFFNLXFCAFASTLVKINVGFFENNVGVPPANTFDSRHRKHNLAF 126
P W + + D L C S V +NVGF E N+G N +S
Sbjct: 82 PGWNAVGEGVLKDLHESILLGRCELTSAFVNVNVGFLEGNIGKAAPNPLNSDKGTLKYDL 141
Query: 125 AIDVRIHDTKNMLKFV-WNDQRH 60
A+DV + T+ + V ND+ H
Sbjct: 142 ALDVCVKHTQEVPVVVGLNDRCH 164
>UniRef50_Q601J1 Cluster: 30S ribosomal protein S13; n=3; Mycoplasma
hyopneumoniae|Rep: 30S ribosomal protein S13 -
Mycoplasma hyopneumoniae (strain 232)
Length = 137
Score = 33.9 bits (74), Expect = 1.9
Identities = 28/128 (21%), Positives = 54/128 (42%)
Frame = +3
Query: 99 RIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEXEVEKIITIMSN 278
R++N I ++++ A+ +I G+G+ + +++K +++ G+ K + N
Sbjct: 3 RVLNVEIPNHKRIVIALCSIFGIGKSLATEIVEKTAKLQEEKFGK-------KFPILTEN 55
Query: 279 PXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSXXXXXXXXXXXXXAHRGMRHYWGLRVRG 458
+I L +D+ + T +L +RG+RH GL VRG
Sbjct: 56 TKVKEINEEVLQVIRDVAK---TYKTEGDLHREVQSNIKRLIEIKCYRGIRHRKGLPVRG 112
Query: 459 QHTXTTGR 482
Q T R
Sbjct: 113 QVTQKNAR 120
>UniRef50_Q98JF7 Cluster: Mll1963 protein; n=1; Mesorhizobium
loti|Rep: Mll1963 protein - Rhizobium loti
(Mesorhizobium loti)
Length = 315
Score = 33.5 bits (73), Expect = 2.6
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = -2
Query: 236 AFASTLVKINVGFFENNVG-VPPANTFDSRHRK-HNLAFAIDVRIHDTKNML 87
AFA T V+ VGF++ VG + +D +K H+ AF DV + DTK L
Sbjct: 23 AFAETPVEPTVGFYKYTVGDIEVTAIYDGIWKKPHDPAFIKDVSVEDTKAAL 74
>UniRef50_A5FGA8 Cluster: DNA-(Apurinic or apyrimidinic site) lyase;
n=1; Flavobacterium johnsoniae UW101|Rep: DNA-(Apurinic
or apyrimidinic site) lyase - Flavobacterium johnsoniae
UW101
Length = 216
Score = 33.5 bits (73), Expect = 2.6
Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = +3
Query: 75 PDKFQHILRIMNT--NIDGKRKVMFAMTAIKGVGRRYSNIVLKKAD 206
P K Q +L I +T N + M +TA+KG+GR+ +N++L++ +
Sbjct: 87 PTKAQWLLEIAHTIQNDNDIPLTMSGLTALKGIGRKSANVILRETE 132
>UniRef50_Q7PY55 Cluster: ENSANGP00000013280; n=4;
Endopterygota|Rep: ENSANGP00000013280 - Anopheles
gambiae str. PEST
Length = 183
Score = 33.1 bits (72), Expect = 3.4
Identities = 23/51 (45%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = +3
Query: 117 IDGKRKVMFAMTAIKGVGRRYSNIVLK---KADI-DLDKRAGECTEXEVEK 257
+D K KV A G+GR +S +LK K I DLD AGE T E+EK
Sbjct: 1 MDLKNKVALVTGAATGLGRAFSEELLKHGAKVVICDLDSDAGELTVEELEK 51
>UniRef50_Q6UVP6 Cluster: Ribosomal protein S13; n=1;
Pseudendoclonium akinetum|Rep: Ribosomal protein S13 -
Pseudendoclonium akinetum (Green alga)
Length = 119
Score = 28.3 bits (60), Expect(2) = 3.4
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +3
Query: 102 IMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEXEVE 254
++ +N+ + FA+ AI GVG++ + V I+ R E ++E
Sbjct: 3 LLGSNVSENKAAFFALQAIYGVGQKSAAAVCNLVGINPQTRLRELNSTQLE 53
Score = 23.8 bits (49), Expect(2) = 3.4
Identities = 14/52 (26%), Positives = 20/52 (38%)
Frame = +3
Query: 318 QKDIVDGKYSQLTSSNLDSXXXXXXXXXXXXXAHRGMRHYWGLRVRGQHTXT 473
Q +++ +L +SN +RG RH L RGQ T T
Sbjct: 51 QLELLTKSCRRLIASNKKREKVEAIKSLIKISCYRGTRHMNALPCRGQRTRT 102
>UniRef50_Q4FQV4 Cluster: Putative uncharacterized protein; n=2;
Psychrobacter|Rep: Putative uncharacterized protein -
Psychrobacter arcticum
Length = 720
Score = 31.9 bits (69), Expect = 7.8
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +3
Query: 15 PCCCVLGTLVRNLTKMSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIV 191
P TL+R +K S+V P + H + N +DG + F + A K + YSN++
Sbjct: 243 PLSAFAHTLLRIDSKASVVDPSQIHHAYAL-NDTVDGDTEDNFVLYATKSMTGGYSNLI 300
>UniRef50_A0NKF0 Cluster: Rhamnosyltransferase; n=1; Oenococcus oeni
ATCC BAA-1163|Rep: Rhamnosyltransferase - Oenococcus
oeni ATCC BAA-1163
Length = 311
Score = 31.9 bits (69), Expect = 7.8
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = +3
Query: 87 QHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEXEVEKIIT 266
QH ++ T + K +F + I + Y N + KK +L K GEC E I
Sbjct: 215 QHSSNVVGTTGNNLFKKIFKIREI--FNKFYKNGLFKKQANELLKNYGECLSKEKRNAIN 272
Query: 267 I-MSNPXQYKIPXWFLNRQK 323
I +S+ Q K W L + K
Sbjct: 273 IFLSSNRQLKEVFWILKKIK 292
>UniRef50_Q7RQE1 Cluster: Protein factor associated with
neutral-sphingomyelinase activation; n=3; Plasmodium
(Vinckeia)|Rep: Protein factor associated with
neutral-sphingomyelinase activation - Plasmodium yoelii
yoelii
Length = 1490
Score = 31.9 bits (69), Expect = 7.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 209 NVGFFENNVGVPPANTFDSRHRKHNL 132
N+ F NN PP NTF+ ++K+N+
Sbjct: 1189 NLSQFSNNCATPPINTFEKENQKYNV 1214
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 488,060,121
Number of Sequences: 1657284
Number of extensions: 9065155
Number of successful extensions: 22697
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 22215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22678
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 27710252790
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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