Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_I09
(483 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582 189 9e-49
07_01_0525 + 3904388-3904390,3904485-3904645,3905347-3905394,390... 178 2e-45
03_06_0283 - 32832572-32832677,32833343-32833531,32833582-328337... 177 5e-45
07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978 69 1e-12
06_03_1275 + 28903961-28904123,28904225-28904322,28904406-289045... 28 3.4
03_01_0104 - 830884-831282,831511-832205,832368-833387,833570-83... 28 4.5
03_01_0646 + 4742398-4742994,4743681-4744085 27 6.0
03_05_0839 + 28097780-28097878,28098573-28098782,28099196-28099372 27 7.9
>07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582
Length = 148
Score = 189 bits (461), Expect = 9e-49
Identities = 80/135 (59%), Positives = 107/135 (79%)
Frame = +3
Query: 78 DKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEXEVEK 257
+ FQHILR++NTN+DGK+K+MFA+T+IKG+GRR+SNI KKADID++KRAGE T E+E+
Sbjct: 3 EDFQHILRLLNTNVDGKQKIMFALTSIKGIGRRFSNIACKKADIDMNKRAGELTPEELER 62
Query: 258 IITIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSXXXXXXXXXXXXXAHRGMRHY 437
++T+++NP Q+K+P WFLNR+KD DG++SQ+ S+ LD HRG+RHY
Sbjct: 63 LMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHY 122
Query: 438 WGLRVRGQHTXTTGR 482
WGLRVRGQHT TTGR
Sbjct: 123 WGLRVRGQHTKTTGR 137
>07_01_0525 +
3904388-3904390,3904485-3904645,3905347-3905394,
3905714-3905902,3906872-3906977
Length = 168
Score = 178 bits (434), Expect = 2e-45
Identities = 84/157 (53%), Positives = 111/157 (70%), Gaps = 16/157 (10%)
Frame = +3
Query: 60 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKR----- 224
MSL+ + FQHILR++NTN+DGK+K+MFA+T+IKGVGRR+SNI KKADID++KR
Sbjct: 1 MSLIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRSGVVC 60
Query: 225 -----------AGECTEXEVEKIITIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLD 371
AGE T E+E+++T+++NP Q+K+P WFLNR+KD DG++SQ+ S+ LD
Sbjct: 61 YYLAVHNYVEWAGELTPEELERLMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNALD 120
Query: 372 SXXXXXXXXXXXXXAHRGMRHYWGLRVRGQHTXTTGR 482
HRG+RHYWGLRVRGQHT TTGR
Sbjct: 121 MKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGR 157
>03_06_0283 -
32832572-32832677,32833343-32833531,32833582-32833796,
32833900-32833902
Length = 170
Score = 177 bits (430), Expect = 5e-45
Identities = 84/159 (52%), Positives = 111/159 (69%), Gaps = 18/159 (11%)
Frame = +3
Query: 60 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKR----- 224
MSL+ + FQHILR++NTN+DGK+K+MFA+T+IKGVGRR+SNI KKADID++KR
Sbjct: 1 MSLIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRQEPPP 60
Query: 225 -------------AGECTEXEVEKIITIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSSN 365
AGE T E+E+++T+++NP Q+K+P WFLNR+KD DG++SQ+ S+
Sbjct: 61 PPSRRQISVMVGGAGELTPEELERLMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNA 120
Query: 366 LDSXXXXXXXXXXXXXAHRGMRHYWGLRVRGQHTXTTGR 482
LD HRG+RHYWGLRVRGQHT TTGR
Sbjct: 121 LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGR 159
>07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978
Length = 78
Score = 69.3 bits (162), Expect = 1e-12
Identities = 32/61 (52%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Frame = +3
Query: 303 WFL-NRQKDIVDGKYSQLTSSNLDSXXXXXXXXXXXXXAHRGMRHYWGLRVRGQHTXTTG 479
W L R+KD DG++SQ+ S+ LD HRG+RHYWGLRVRGQHT TTG
Sbjct: 7 WILPERKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTG 66
Query: 480 R 482
R
Sbjct: 67 R 67
>06_03_1275 +
28903961-28904123,28904225-28904322,28904406-28904550,
28904690-28904814,28904957-28905049,28905297-28905362,
28905459-28905524,28905790-28905870,28905947-28906123,
28906212-28906287,28906394-28906521,28906639-28906950
Length = 509
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -3
Query: 205 SAFLRTMLEYLRPTPLIAVIANITL 131
S+FL TM EY+R P A +AN T+
Sbjct: 255 SSFLGTMEEYIREAPRTAPVANKTV 279
>03_01_0104 -
830884-831282,831511-832205,832368-833387,833570-833696,
834342-834709,834780-835059,835137-835466
Length = 1072
Score = 27.9 bits (59), Expect = 4.5
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +3
Query: 168 GRRYSNIV--LKKADIDLDKRAGECTEXEVEKIITIMSNPXQYKIPXWFLNRQKDIVDGK 341
G+ + N++ LK D DL E K+ +MS P K+ W + D+ DGK
Sbjct: 514 GKPWRNVLEHLKIQDTDLWSSTNEDNCLWNAKLFPVMSLPETLKVGMWLMGSTCDL-DGK 572
Query: 342 YSQL 353
+ L
Sbjct: 573 VASL 576
>03_01_0646 + 4742398-4742994,4743681-4744085
Length = 333
Score = 27.5 bits (58), Expect = 6.0
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 143 CDDGYQRCWPEVLQHCSQKSR 205
CDD Y+R W +L+ ++SR
Sbjct: 296 CDDSYRRAWSRLLRRLVRESR 316
>03_05_0839 + 28097780-28097878,28098573-28098782,28099196-28099372
Length = 161
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 417 HRGMRHYWGLRVRGQHTXTTGR 482
+RG+RH GL VRGQ T R
Sbjct: 120 YRGIRHKLGLPVRGQRTKNNCR 141
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,279,424
Number of Sequences: 37544
Number of extensions: 249671
Number of successful extensions: 593
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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