Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_I04
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.10c |||methylthioribose-1-phosphate isomerase |Schizosa...    67   2e-12
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    29   0.44 
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    27   2.3  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   4.1  
SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom...    25   9.5  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   9.5  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    25   9.5  
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    25   9.5  

>SPBC23E6.10c |||methylthioribose-1-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 359

 Score = 66.9 bits (156), Expect = 2e-12
 Identities = 39/95 (41%), Positives = 53/95 (55%)
 Frame = +1

Query: 199 MSLXSIKYTTGSXXXXXXXXXXXQTRYIKVRGVEDGWKVINKMQVRGAPAIAIVGCLSLA 378
           MSL +I Y               + +YI V  VED + VI KMQVRGAPAIAIV  LS+A
Sbjct: 1   MSLQAIIYNEDKLLVLDQLLLPYERKYISVSNVEDAFAVIKKMQVRGAPAIAIVAALSVA 60

Query: 379 VELSPDNESSKKNMRQEIEGKLNYLVSARPTAVNI 483
           V L   +E +  + ++ +     +L  +RPTAVN+
Sbjct: 61  VGLKHLSEDA--DAKEYVINSFEHLKQSRPTAVNL 93


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -1

Query: 575  KTNLSLKISAEILSSAQSVFAKFISSSAANFIFTAVGLAD 456
            K N S+  S  IL SAQ   AKF+ +S +N     + L D
Sbjct: 1429 KRNESMLQSKRILDSAQQDVAKFVDTSQSNLDVQLISLKD 1468


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
           Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 367 LSLAVELSPDNESSKKNMRQEIEGKLN 447
           LS  +E S  +ESSK N+  E+E K++
Sbjct: 312 LSRQIEFSKKDESSKLNILSELESKIS 338


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 28/106 (26%), Positives = 56/106 (52%), Gaps = 4/106 (3%)
 Frame = -1

Query: 584 NIIKTNLS-LKISAEILSSAQSVF--AKFISSSAANFIFTAVGLADTR*LSLPSISCLMF 414
           +I+ +++S + IS+ + + + SV   +  + SS+++ I ++  +A +    +PS S L+ 
Sbjct: 648 SILSSSISTIPISSSLSTYSSSVIPSSSTLVSSSSSLIVSSSPVASSSSSPIPSSSSLVS 707

Query: 413 FFEDSLSGDNSTASDKQPT-MAMAGAPRTCILFITFQPSSTPRTLI 279
            +  SLS  N T S    T M+ + A  T +   T   +S+  TL+
Sbjct: 708 TYSASLS--NITHSSLSLTAMSSSSAIPTSVNSSTLITASSSNTLL 751


>SPAC6F12.13c |fps1||geranyltranstransferase
           Fps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 176 FSVLNHWKKFIDIFKLLYWSFNLSMHLIMH 87
           FS+  H   FI I+K  ++SF L + L MH
Sbjct: 180 FSLQKH--SFIVIYKTAFYSFYLPVALAMH 207


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 477 YSCWPGRHQIVKFTFDLLPH 418
           Y CW G+ +  +F  +L+PH
Sbjct: 257 YLCWCGKQEKPEFVKNLVPH 276


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -1

Query: 488 NFIFTAVGLADTR*LSLPSISCLMFFFEDSLSGDNSTASD 369
           N+ F  + + DT    L  I CL+F  + SL+ DN+ AS+
Sbjct: 673 NWAFRKLLINDTEGC-LVIIKCLLFPGDKSLTSDNNRASE 711


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = +1

Query: 397 NESSKKNMRQEIEGKLNYLVSARPTAVNIKLAADE-LINLANTLCADDSISAEIFKER 567
           N+ +  N  +E+E KL+ ++      V  + +++E L+N    L  D+ + AE+F+ER
Sbjct: 713 NQDASDN--EELERKLDKVLEDADAKVKDEESSEEELMNDEQMLALDEKL-AEVFRER 767


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,284,404
Number of Sequences: 5004
Number of extensions: 44660
Number of successful extensions: 101
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)