Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_I04
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0728 + 6023361-6023495,6024880-6025212,6025306-6025361,602...    76   2e-14
11_04_0367 - 16840732-16843428,16844425-16844760                       29   4.2  
03_06_0508 + 34417540-34417649,34418239-34418338,34418445-344184...    28   5.6  
01_06_1342 - 36438869-36439459,36439567-36439627,36440751-364411...    28   5.6  
07_01_0580 + 4316895-4317053,4317530-4318024,4318124-4319305           27   9.8  

>11_01_0728 +
           6023361-6023495,6024880-6025212,6025306-6025361,
           6025526-6025684,6025790-6025889,6026481-6026623,
           6026728-6026833,6027139-6027277,6027363-6027631,
           6027734-6027820
          Length = 508

 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 48/122 (39%), Positives = 63/122 (51%), Gaps = 2/122 (1%)
 Frame = +1

Query: 202 SLXSIKYTTGSXXXXXXXXXXXQTRYIKVRGVEDGWKVINKMQVRGAPAIAIVGCLSLAV 381
           +L SI Y  GS           +  YI V+   DGW  I  M VRGAPAIAI   L+LAV
Sbjct: 140 ALQSIVYHRGSLRLLDQRKLPLEVDYIDVKCSGDGWNAIRDMVVRGAPAIAIAAALALAV 199

Query: 382 ELS--PDNESSKKNMRQEIEGKLNYLVSARPTAVNIKLAADELINLANTLCADDSISAEI 555
           E+S   D   +       +  KL YLVS+RPTAVN+  AA +L +L +     +  +  I
Sbjct: 200 EVSGLEDFTGTPAEAAVFVSEKLEYLVSSRPTAVNLSDAATKLRSLVSRTAETEKDAKAI 259

Query: 556 FK 561
           F+
Sbjct: 260 FQ 261


>11_04_0367 - 16840732-16843428,16844425-16844760
          Length = 1010

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -2

Query: 412 FLKIH-CQVIIQRLVISNPLWLWLVLHGPAFYLLLSNHPQHLAL 284
           F+ IH C   +Q  V S+PLW  +++ G   Y  + N+P+H  L
Sbjct: 541 FMSIHNCDTSVQFSVTSHPLWA-IIVFGVKNYSRV-NNPEHFFL 582


>03_06_0508 +
           34417540-34417649,34418239-34418338,34418445-34418478,
           34418559-34418635,34418929-34419005,34419060-34419224,
           34419306-34419420,34419546-34419650
          Length = 260

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +1

Query: 271 TRYIKVRGVEDGWKVINKMQVRGAPAIAIVGCLSLAVELSPDNESSKKNMRQEI 432
           TRY++  GV  GW ++ K+  RGA  +A       A +L+      K+N+ +++
Sbjct: 146 TRYVQNGGVH-GWNLMRKLTSRGANVLAQTLLQPGASDLTGSFRLYKRNVLEDL 198


>01_06_1342 -
           36438869-36439459,36439567-36439627,36440751-36441130,
           36441955-36442761
          Length = 612

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -2

Query: 337 HGPAFYLLLSNHPQHLA 287
           HG A +LLL +HPQH+A
Sbjct: 25  HGHAGHLLLHHHPQHVA 41


>07_01_0580 + 4316895-4317053,4317530-4318024,4318124-4319305
          Length = 611

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/51 (27%), Positives = 21/51 (41%)
 Frame = -2

Query: 439 YLRSLASCFFLKIHCQVIIQRLVISNPLWLWLVLHGPAFYLLLSNHPQHLA 287
           +   L +C FL I     +     + P WLW  L  P   L L  + Q ++
Sbjct: 317 FFAPLIACLFLAIGVPRSVAPSTAALPAWLWYALMAPMLCLELKIYGQWMS 367


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,198,303
Number of Sequences: 37544
Number of extensions: 240825
Number of successful extensions: 599
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)