Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_I04
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81030-7|CAB02711.1|  366|Caenorhabditis elegans Hypothetical pr...    69   4e-12
Z82277-2|CAB05250.1|  272|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z66565-5|CAA91482.2|  766|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z93386-3|CAB07648.1|  230|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>Z81030-7|CAB02711.1|  366|Caenorhabditis elegans Hypothetical
           protein C01G10.9 protein.
          Length = 366

 Score = 68.5 bits (160), Expect = 4e-12
 Identities = 39/116 (33%), Positives = 64/116 (55%)
 Frame = +1

Query: 205 LXSIKYTTGSXXXXXXXXXXXQTRYIKVRGVEDGWKVINKMQVRGAPAIAIVGCLSLAVE 384
           L S+K+   +           + +YI V GV D + VI  MQVRGAP IA+VG L L +E
Sbjct: 25  LDSLKFDGTNLEVLDQLLLPHEFKYIPVEGVSDAFAVIKSMQVRGAPLIAVVGSLGLLLE 84

Query: 385 LSPDNESSKKNMRQEIEGKLNYLVSARPTAVNIKLAADELINLANTLCADDSISAE 552
           +   +E   +++ Q    K+N+L+S+RPTAV+++ + + L  +  +    D +  E
Sbjct: 85  IQKASELDSESIIQ----KINFLISSRPTAVDLRNSLNGLKPILESQDYSDVVKLE 136


>Z82277-2|CAB05250.1|  272|Caenorhabditis elegans Hypothetical
           protein LLC1.2 protein.
          Length = 272

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/37 (35%), Positives = 25/37 (67%)
 Frame = +1

Query: 466 PTAVNIKLAADELINLANTLCADDSISAEIFKERFVL 576
           PT V+ K  A +  N+A +L  +D++SA++FK+  ++
Sbjct: 23  PTCVDAKFQACQY-NMAQSLGLNDTVSAQLFKDYTIM 58


>Z66565-5|CAA91482.2|  766|Caenorhabditis elegans Hypothetical
           protein T04F8.6 protein.
          Length = 766

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = +1

Query: 475 VNIKLAADELINLANTLCADDSISAEIFKERFVLIMLSLI 594
           +N+ + A+ +I+    LC D +I+   FK+RF+L +  +I
Sbjct: 45  LNLSIFANSIID--RVLCNDHAINFNQFKDRFLLFLPEII 82


>Z93386-3|CAB07648.1|  230|Caenorhabditis elegans Hypothetical
           protein R11H6.4 protein.
          Length = 230

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -2

Query: 433 RSLASCFFLKIHCQVIIQRLVISNPLWLWLVLHGPAFYLLLSN 305
           RSL  CF + + C    + LV+S  L+   V H   F+  LS+
Sbjct: 34  RSLRLCFTMFLLCNNFCRLLVVSIILFYQSVTHPHRFFFFLSS 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,344,031
Number of Sequences: 27780
Number of extensions: 239915
Number of successful extensions: 577
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)