Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_I03
         (494 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal prot...   161   3e-40
U55374-4|AAB36866.2|  589|Caenorhabditis elegans Immunoglobulin-...    31   0.46 
U55374-3|ABS19462.1|  591|Caenorhabditis elegans Immunoglobulin-...    31   0.46 
AL110487-17|CAB54422.2|  135|Caenorhabditis elegans Hypothetical...    29   1.9  
Z82051-6|CAB04821.1|  354|Caenorhabditis elegans Hypothetical pr...    28   4.3  
Z99171-7|CAB16312.1|  188|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 23 protein.
          Length = 140

 Score =  161 bits (390), Expect = 3e-40
 Identities = 74/87 (85%), Positives = 79/87 (90%)
 Frame = +1

Query: 166 IKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGV 345
           I+GRLNRLP+AG GDM V +VKKGKPELRKKV+  VVIRQRK FRR+DG FIYFEDNAGV
Sbjct: 45  IRGRLNRLPSAGVGDMFVCSVKKGKPELRKKVLQGVVIRQRKQFRRKDGTFIYFEDNAGV 104

Query: 346 IVNNXGEMKGSAITGPVAKECADLWPR 426
           IVNN GEMKGSAITGPVAKECADLWPR
Sbjct: 105 IVNNKGEMKGSAITGPVAKECADLWPR 131



 Score = 54.4 bits (125), Expect = 4e-08
 Identities = 29/45 (64%), Positives = 34/45 (75%)
 Frame = +3

Query: 30  MSKRGRGGSAGAKFRISLGSPSWEQ*STAPTTQGAKNLYVIAVQG 164
           MSKRGRGG++GAKFRISLG P     + A  T GAKNL+VI+V G
Sbjct: 1   MSKRGRGGASGAKFRISLGLPVGAVMNCADNT-GAKNLFVISVYG 44


>U55374-4|AAB36866.2|  589|Caenorhabditis elegans
           Immunoglobulin-like cell adhesionmolecule family protein
           3, isoform a protein.
          Length = 589

 Score = 31.1 bits (67), Expect = 0.46
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 145 YRFFAPCVVGAVDYCSQLGEPREIRNFAPAEPP 47
           YRFF  CV GA   C Q G  + ++    + PP
Sbjct: 164 YRFFVECVRGADGLCQQSGRRKTLKCDVQSNPP 196


>U55374-3|ABS19462.1|  591|Caenorhabditis elegans
           Immunoglobulin-like cell adhesionmolecule family protein
           3, isoform b protein.
          Length = 591

 Score = 31.1 bits (67), Expect = 0.46
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 145 YRFFAPCVVGAVDYCSQLGEPREIRNFAPAEPP 47
           YRFF  CV GA   C Q G  + ++    + PP
Sbjct: 164 YRFFVECVRGADGLCQQSGRRKTLKCDVQSNPP 196


>AL110487-17|CAB54422.2|  135|Caenorhabditis elegans Hypothetical
           protein Y39E4B.13 protein.
          Length = 135

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +3

Query: 6   FLNFXYNKMSKRGRGGSAGAKFRISLGSPSWEQ*STAPTTQGAK 137
           F  F  N+  K G  G  G    +SL  P  ++ + APTT GAK
Sbjct: 17  FTIFCANRKKKNGADGEGGD---VSLVQPGAQKNAPAPTTTGAK 57


>Z82051-6|CAB04821.1|  354|Caenorhabditis elegans Hypothetical
           protein T23D5.9 protein.
          Length = 354

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 351 DYDTRIVLKVYKYSITPSERFPL 283
           DY +  V K+Y YSIT   RFP+
Sbjct: 162 DYMSEPVQKMYNYSITSLPRFPI 184


>Z99171-7|CAB16312.1|  188|Caenorhabditis elegans Hypothetical
           protein F47G4.8 protein.
          Length = 188

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 465 NVYSSYRARV*GNTRPQISTFFGYRPCDGRALHFAXVI 352
           ++  S RAR+     P +  F  YRPC  R L +  ++
Sbjct: 86  SIAPSPRARLTSQCSPGLGGFGVYRPCTSRTLPYRQIL 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,545,337
Number of Sequences: 27780
Number of extensions: 248759
Number of successful extensions: 571
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)