Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_I01
         (331 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...    56   1e-09
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   3.0  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    24   6.8  
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    23   9.0  

>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score = 56.4 bits (130), Expect = 1e-09
 Identities = 26/58 (44%), Positives = 34/58 (58%)
 Frame = +1

Query: 85  RHWQRFVKTWFNQPARRYRXKQNXIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAG 258
           + WQR+VKTWFNQP R+ R +Q                 +RP V+ PT+RY+ KVRAG
Sbjct: 16  KDWQRYVKTWFNQPGRKLRRRQAR-QTKAAKIAPRPVEAIRPAVKPPTIRYNMKVRAG 72



 Score = 25.8 bits (54), Expect = 1.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 242 LKYAPXRGFTLREIRAAGLN 301
           +K    RGFTL E++AAG++
Sbjct: 67  MKVRAGRGFTLEELKAAGVS 86


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 331 PKFXFGANSWVQSCGPN 281
           P+F F A S+V S GPN
Sbjct: 260 PRFPFSAQSFVFSVGPN 276


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1283

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
 Frame = -2

Query: 255  GAYFSM----VPNSWASHYRT*RPSCRTWSYGLSFLY 157
            G+Y  M    +   W S   T    C TWSY  S+ Y
Sbjct: 1222 GSYICMPHFQIQYDWCSAGVTDMSECNTWSYQKSYDY 1258


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 110 VLTNLCQCLVEMSIRYHIIPLAHF 39
           +L N+C+   + S   H+  LAHF
Sbjct: 868 LLYNVCEGASDRSFGIHVAKLAHF 891


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,307,029
Number of Sequences: 5004
Number of extensions: 21738
Number of successful extensions: 53
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)