Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_I01
         (331 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0110 - 866728-866952,867035-867193,867315-867448,868225-86...    59   7e-10
03_05_0108 - 20887146-20887370,20887460-20887618,20887930-208880...    59   7e-10
06_01_0445 + 3144526-3145013,3145493-3145814,3146197-3146445           28   1.5  
05_01_0320 - 2524700-2524810,2525075-2525183,2525607-2525683,252...    28   2.0  
02_04_0147 + 20194244-20195717,20195953-20195969                       27   2.7  
10_02_0192 + 6517985-6518348,6518647-6518699,6519984-6520021,652...    27   4.7  
03_02_0599 - 9730204-9730314,9730766-9731549,9731631-9732051,973...    26   8.3  

>06_01_0110 -
           866728-866952,867035-867193,867315-867448,868225-868333
          Length = 208

 Score = 59.3 bits (137), Expect = 7e-10
 Identities = 26/58 (44%), Positives = 34/58 (58%)
 Frame = +1

Query: 85  RHWQRFVKTWFNQPARRYRXKQNXIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAG 258
           +HWQ +VKTWFNQPAR+ R +                  LRPIV+C T++Y+ K RAG
Sbjct: 15  KHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQCQTLKYNMKSRAG 72



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +3

Query: 42 MGKGNNMIPNGHFHK 86
          M K NN+IPNGHF K
Sbjct: 1  MVKHNNVIPNGHFKK 15



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 242 LKYAPXRGFTLREIRAAGLNPAICP 316
           +K    RGFTL E++AAG+     P
Sbjct: 67  MKSRAGRGFTLEELKAAGIPKKFAP 91


>03_05_0108 -
           20887146-20887370,20887460-20887618,20887930-20888063,
           20888597-20888705
          Length = 208

 Score = 59.3 bits (137), Expect = 7e-10
 Identities = 26/58 (44%), Positives = 34/58 (58%)
 Frame = +1

Query: 85  RHWQRFVKTWFNQPARRYRXKQNXIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAG 258
           +HWQ +VKTWFNQPAR+ R +                  LRPIV+C T++Y+ K RAG
Sbjct: 15  KHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQCQTLKYNMKSRAG 72



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +3

Query: 42 MGKGNNMIPNGHFHK 86
          M K NN+IPNGHF K
Sbjct: 1  MVKHNNVIPNGHFKK 15



 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 242 LKYAPXRGFTLREIRAAGLNPAICP 316
           +K    RGFTL E++AAG+     P
Sbjct: 67  MKSRAGRGFTLEELKAAGIPKKYAP 91


>06_01_0445 + 3144526-3145013,3145493-3145814,3146197-3146445
          Length = 352

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = -2

Query: 234 PNSWASHYRT*RPSCRTWSYGLSFLYXILLXAVSSSWLVKPSF-NKSLPMPCGNVH*VSY 58
           P  W       R +   +S  +  L   LL  VS S  + PS+  +++     N+  VSY
Sbjct: 152 PTRWPDFVPGYRDTVVKYSDSMKDLAQKLLRIVSESLNLPPSYIEEAVGEVYQNIT-VSY 210

Query: 57  YSPCP 43
           YSPCP
Sbjct: 211 YSPCP 215


>05_01_0320 -
           2524700-2524810,2525075-2525183,2525607-2525683,
           2525795-2525873,2526058-2526147,2526779-2526903,
           2527288-2527468,2527712-2527905,2528008-2528411,
           2528519-2528605,2528802-2529582
          Length = 745

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 233 GTILKYAPXRGFTLREIRAAGLNPAICP 316
           G +  Y P   +TL ++RA G +  ICP
Sbjct: 167 GDLASYMPPGVYTLADLRALGRDRGICP 194


>02_04_0147 + 20194244-20195717,20195953-20195969
          Length = 496

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 213 YRT*RPSCRTWSYGLSF 163
           Y T RP CR W + LSF
Sbjct: 264 YHTARPGCRYWVFSLSF 280


>10_02_0192 +
           6517985-6518348,6518647-6518699,6519984-6520021,
           6522332-6522717,6523752-6523822,6524620-6524732,
           6525019-6525337,6525576-6525886,6526493-6527069,
           6530483-6530538,6531643-6532126
          Length = 923

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 159 YXILLXAVSSSWLVKPSFNKSLPMPCGN 76
           Y IL   +   WL K    +S+P P GN
Sbjct: 397 YKILTEQMRQEWLEKVQKRRSMPRPTGN 424


>03_02_0599 -
          9730204-9730314,9730766-9731549,9731631-9732051,
          9732139-9732385,9733730-9733921,9734071-9734204,
          9734316-9734477,9736162-9736200,9737507-9737825
          Length = 802

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 33 DVKMGKGNNMIPNGHFHK 86
          DVK G GN ++ NGH HK
Sbjct: 16 DVK-GTGNGILENGHSHK 32


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,672,100
Number of Sequences: 37544
Number of extensions: 149714
Number of successful extensions: 289
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 287
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)