Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_I01
         (331 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal prote...    60   5e-10
U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal prote...    60   5e-10
Z82269-7|CAB05204.2|  786|Caenorhabditis elegans Hypothetical pr...    26   5.5  
Z82269-6|CAB05206.3|  809|Caenorhabditis elegans Hypothetical pr...    26   5.5  
Z74033-9|CAN99687.1|  228|Caenorhabditis elegans Hypothetical pr...    26   5.5  
DQ143943-1|AAZ73241.1|  770|Caenorhabditis elegans RNA-decapping...    26   5.5  
AL021488-8|CAJ43919.1|  786|Caenorhabditis elegans Hypothetical ...    26   5.5  
AL021488-7|CAJ43918.1|  809|Caenorhabditis elegans Hypothetical ...    26   5.5  
Z54284-3|CAA91063.1|  666|Caenorhabditis elegans Hypothetical pr...    25   9.7  
U97196-13|AAK68666.1|  430|Caenorhabditis elegans Altered averme...    25   9.7  
U41113-1|AAC25482.1|  430|Caenorhabditis elegans inhibitory amin...    25   9.7  

>U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform b protein.
          Length = 88

 Score = 59.7 bits (138), Expect = 5e-10
 Identities = 25/58 (43%), Positives = 33/58 (56%)
 Frame = +1

Query: 85  RHWQRFVKTWFNQPARRYRXKQNXIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAG 258
           +HW + +KTWF+QPAR+ R +QN                LR +VRCP  RY+TK R G
Sbjct: 16  KHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQKRYNTKTRLG 73


>U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform a protein.
          Length = 207

 Score = 59.7 bits (138), Expect = 5e-10
 Identities = 25/58 (43%), Positives = 33/58 (56%)
 Frame = +1

Query: 85  RHWQRFVKTWFNQPARRYRXKQNXIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAG 258
           +HW + +KTWF+QPAR+ R +QN                LR +VRCP  RY+TK R G
Sbjct: 16  KHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQKRYNTKTRLG 73



 Score = 26.6 bits (56), Expect = 4.2
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +2

Query: 185 VLQLGRYVL*CDAQLFGTILKYAPXRGFTLREIRAAGLNPA 307
           V  L R V+ C  + + T  K    RGF+L+E++AAG++ A
Sbjct: 51  VAGLLRSVVRCPQKRYNT--KTRLGRGFSLQELKAAGISQA 89


>Z82269-7|CAB05204.2|  786|Caenorhabditis elegans Hypothetical
           protein F52G2.1b protein.
          Length = 786

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = -2

Query: 324 SVSGQIAGFNPAALISRRVNPLXGAYFSMVPNSWASHYRT*RPSCRTWS 178
           S+S   A     A+I+R   P+   YF       A   ++  P+C  W+
Sbjct: 703 SISSLAASNQELAMINREETPIEDPYFKQQAYQKAQKAQSLIPACSQWT 751


>Z82269-6|CAB05206.3|  809|Caenorhabditis elegans Hypothetical
           protein F52G2.1a protein.
          Length = 809

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = -2

Query: 324 SVSGQIAGFNPAALISRRVNPLXGAYFSMVPNSWASHYRT*RPSCRTWS 178
           S+S   A     A+I+R   P+   YF       A   ++  P+C  W+
Sbjct: 726 SISSLAASNQELAMINREETPIEDPYFKQQAYQKAQKAQSLIPACSQWT 774


>Z74033-9|CAN99687.1|  228|Caenorhabditis elegans Hypothetical
           protein F38B7.2b protein.
          Length = 228

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 64  YLMDISTRHWQRFVKTWFNQPARRYRXKQN 153
           Y  DIST  + RFVKT F + +  +   +N
Sbjct: 29  YHADISTNFYPRFVKTVFAEESHNFDVIEN 58


>DQ143943-1|AAZ73241.1|  770|Caenorhabditis elegans RNA-decapping
           protein protein.
          Length = 770

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = -2

Query: 324 SVSGQIAGFNPAALISRRVNPLXGAYFSMVPNSWASHYRT*RPSCRTWS 178
           S+S   A     A+I+R   P+   YF       A   ++  P+C  W+
Sbjct: 687 SISSLAASNQELAMINREETPIEDPYFKQQAYQKAQKAQSLIPACSQWT 735


>AL021488-8|CAJ43919.1|  786|Caenorhabditis elegans Hypothetical
           protein F52G2.1b protein.
          Length = 786

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = -2

Query: 324 SVSGQIAGFNPAALISRRVNPLXGAYFSMVPNSWASHYRT*RPSCRTWS 178
           S+S   A     A+I+R   P+   YF       A   ++  P+C  W+
Sbjct: 703 SISSLAASNQELAMINREETPIEDPYFKQQAYQKAQKAQSLIPACSQWT 751


>AL021488-7|CAJ43918.1|  809|Caenorhabditis elegans Hypothetical
           protein F52G2.1a protein.
          Length = 809

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = -2

Query: 324 SVSGQIAGFNPAALISRRVNPLXGAYFSMVPNSWASHYRT*RPSCRTWS 178
           S+S   A     A+I+R   P+   YF       A   ++  P+C  W+
Sbjct: 726 SISSLAASNQELAMINREETPIEDPYFKQQAYQKAQKAQSLIPACSQWT 774


>Z54284-3|CAA91063.1|  666|Caenorhabditis elegans Hypothetical
           protein D2085.3 protein.
          Length = 666

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 141 AVSSSWLVKPSFNKSLPMPCGNVH*VSYYSPCPF*RRS 28
           A+  + + + +F K    P GNVH   + +  PF RRS
Sbjct: 417 AIFKNAINEETFEKLSSQPIGNVHVSKFRNGGPFWRRS 454


>U97196-13|AAK68666.1|  430|Caenorhabditis elegans Altered
           avermectin sensitivityprotein 14, isoform b protein.
          Length = 430

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +2

Query: 104 LKLGLTSQLDDTAXSKIX*RKLRP*LHVLQLGRYVL*CDAQLFGTILKYA 253
           + LG+T+ L  T  +     KL P  ++  +  ++  C A +FG +L+YA
Sbjct: 286 VSLGVTTLLTMTTQASGINSKLPPVSYIKAVDVWIGVCLAFIFGALLEYA 335


>U41113-1|AAC25482.1|  430|Caenorhabditis elegans inhibitory amino
           acid receptorsubunit gbr-2B protein.
          Length = 430

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +2

Query: 104 LKLGLTSQLDDTAXSKIX*RKLRP*LHVLQLGRYVL*CDAQLFGTILKYA 253
           + LG+T+ L  T  +     KL P  ++  +  ++  C A +FG +L+YA
Sbjct: 286 VSLGVTTLLTMTTQASGINTKLPPVSYIKAVDVWIGVCLAFIFGALLEYA 335


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,155,249
Number of Sequences: 27780
Number of extensions: 119749
Number of successful extensions: 205
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)