Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_H22
         (373 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101312-3|AAC69219.1|   83|Caenorhabditis elegans Ribosomal pro...   108   1e-24
U58751-7|AAB00658.2|  729|Caenorhabditis elegans Hepatocyte grow...    28   2.4  
U23517-8|AAM98041.1|  605|Caenorhabditis elegans A kinase anchor...    27   3.2  
U23517-7|AAM98040.1| 1284|Caenorhabditis elegans A kinase anchor...    27   3.2  
AC024200-2|AAF35997.2|  189|Caenorhabditis elegans Hypothetical ...    26   9.9  

>AF101312-3|AAC69219.1|   83|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 27 protein.
          Length = 83

 Score =  108 bits (260), Expect = 1e-24
 Identities = 45/59 (76%), Positives = 51/59 (86%)
 Frame = +1

Query: 37  VPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGRAXLTEGCSFXRKQ 213
           V HPNSYFMDVKC GC+KI+TVFSHA  VVVC GC+T+LCQPT G+A LTEGCSF +KQ
Sbjct: 25  VQHPNSYFMDVKCSGCFKISTVFSHATTVVVCVGCNTVLCQPTRGKAKLTEGCSFRKKQ 83


>U58751-7|AAB00658.2|  729|Caenorhabditis elegans Hepatocyte growth
           factor-regulatedtk substrate (hrs) family protein 1
           protein.
          Length = 729

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +1

Query: 76  PGCYKITTVFSHAQRVVVCAGCSTILCQPTGGR 174
           P CY+  +VFS   R   C  C  I C     R
Sbjct: 161 PECYRCRSVFSVFTRKHHCRACGQIFCDKCSSR 193


>U23517-8|AAM98041.1|  605|Caenorhabditis elegans A kinase anchor
           protein protein1, isoform c protein.
          Length = 605

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +1

Query: 64  DVKCPGCYKITTVFSHAQRVVVCAGCSTILC 156
           D +CP C    T F+   R   C  C  +LC
Sbjct: 541 DSECPNCMLCNTRFTIITRRHHCRACGRVLC 571


>U23517-7|AAM98040.1| 1284|Caenorhabditis elegans A kinase anchor
           protein protein1, isoform b protein.
          Length = 1284

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +1

Query: 64  DVKCPGCYKITTVFSHAQRVVVCAGCSTILC 156
           D +CP C    T F+   R   C  C  +LC
Sbjct: 541 DSECPNCMLCNTRFTIITRRHHCRACGRVLC 571


>AC024200-2|AAF35997.2|  189|Caenorhabditis elegans Hypothetical
           protein Y71F9AL.10 protein.
          Length = 189

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 55  YFMDVKCPGCYKITTVFSHAQRVVVC 132
           + MD+KCP C+K+         +V+C
Sbjct: 100 FMMDMKCPVCHKVVPSDDADIHLVMC 125


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,559,580
Number of Sequences: 27780
Number of extensions: 99729
Number of successful extensions: 243
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)