Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_H21
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    31   0.14 
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo...    29   0.77 
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    26   5.4  
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    25   9.5  
SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|ch...    25   9.5  

>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
 Frame = +3

Query: 156 LLNSGHE--VTYITTSPL-KEKPNKNYRXIDVSANNEIFKGEXMIDIXCLMDNKVXMNNI 326
           +LN   E  +T++ T  L ++ PN+    ++ S N  IFK + ++   CL  ++  +   
Sbjct: 216 ILNDAREFSLTFLNTLKLARDFPNEIRSYLEASKNFNIFKEKEILRNICL--DECYLKAY 273

Query: 327 FDLQNITIANALMTFENEDVKKLIQNTNESF 419
           F  +++ +     T +  D   ++Q    SF
Sbjct: 274 FSAEDVKVTTPFETLQQFDGDNILQQWKLSF 304


>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
           Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 457

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 446 YRSLCRFLSTVWMSFDMAVFAED*LADSTFDRRTNNSAY 562
           Y S C+  + VW+ FD     +D +++S+ DR  N  AY
Sbjct: 389 YYSFCKSSNGVWLKFD-----DDFVSNSSIDRVLNQQAY 422


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -2

Query: 412 SFVFCINFFTSSFSNVINAFAIVIFCR 332
           S  FCI +  + F ++++  + V+ CR
Sbjct: 718 SMEFCIGYLQNEFIDIVSDLSSVVICR 744


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 188 YVSYLMSGIKEMAHNTSSEDIKTPER 111
           + SY MS +KEM H+     I  P+R
Sbjct: 537 FSSYWMSALKEMYHSIKVSMILQPDR 562


>SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +3

Query: 318 NNIFDLQNITIANALMTFEN--EDVKKLIQNTNESF 419
           N++FD + +TIA  L+T  +  +D K  +Q + + F
Sbjct: 313 NSVFDGKKLTIAKCLLTSSSIKDDTKLQLQISRQPF 348


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,262,097
Number of Sequences: 5004
Number of extensions: 40973
Number of successful extensions: 100
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)